Gene detail information of Glyur000309s00018413.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62940.1 | 0 | acyl-CoA synthetase 5 |
| NR | XP_004516098.1 | 0 | PREDICTED: 4-coumarate--CoA ligase-like 1-like [Cicer arietinum] |
| COG | YP_003407466.1 | 7.00E-115 | AMP-dependent synthetase and ligase [Geodermatophilus obscurus DSM 43160] |
| Swissprot | tr|Q9LQ12|4CLL1_ARATH | 0 | 4-coumarate--CoA ligase-like 1 |
| trEMBL | tr|A0A072UWU0|A0A072UWU0_MEDTR | 0 | 4-coumarate:CoA ligase-like protein {ECO:0000313|EMBL:KEH34087.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00309 | 53058 | 56229 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01904 | 4CL | EC:6.2.1.12 | Phenylalanine metabolism | map00360 |
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000309s00018413.1 | PF00501.23 | AMP-binding | 41 | 108 | 5.10E-11 |
| Glyur000309s00018413.1 | PF00501.23 | AMP-binding | 141 | 410 | 3.90E-66 |
| Glyur000309s00018413.1 | PF13193.1 | AMP-binding_C | 419 | 494 | 4.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.351 |
| SRR1783600 | control | 0.342 |
| SRR1783602 | moderate drought stress | 0.024 |
| SRR1811619 | moderate drought stress | 0.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.199 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.249 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.142 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.070 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.026 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.070 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.278 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.404 |
| SRR2868004 | Drought Stress (root) | 1.414 |
| SRR2967015 | Control (root) | 0.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.151 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.060 |
| SRR9715739 | Root | 0.145 |
| SRR9715742 | Root | 0.033 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.315 |
| SRR8749028 | MeJA induced 9h | 0.281 |
| SRR8749029 | MeJA induced 9h | 0.903 |
| SRR8749030 | Uninduced | 0.270 |
| SRR8749031 | Uninduced | 0.107 |
| SRR8749032 | Uninduced | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.012 |
| SRR8400027 | Control - Root | 0.570 |