Gene detail information of Glyur000309s00018411 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55730.2 | 6.00E-109 | FASCICLIN-like arabinogalactan 1 |
| NR | XP_004516114.1 | 0 | PREDICTED: fasciclin-like arabinogalactan protein 1-like, partial [Cicer arietinum] |
| Swissprot | tr|Q9FM65|FLA1_ARATH | 7.00E-149 | Fasciclin-like arabinogalactan protein 1 (Precursor) |
| trEMBL | tr|M5WIG2|M5WIG2_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ13509.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00309 | 47861 | 49123 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000309s00018411.1 | PF02469.17 | Fasciclin | 204 | 333 | 2.50E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 265.625 |
| SRR1783600 | control | 259.477 |
| SRR1783602 | moderate drought stress | 103.837 |
| SRR1811619 | moderate drought stress | 103.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 88.072 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 83.497 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.949 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.008 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 58.928 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 59.967 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.151 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 137.854 |
| SRR2868004 | Drought Stress (root) | 47.741 |
| SRR2967015 | Control (root) | 50.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.919 |
| SRR9715740 | Leaf | 2.368 |
| SRR9715741 | Leaf | 4.706 |
| SRR9715739 | Root | 152.148 |
| SRR9715742 | Root | 79.273 |
| SRR9715743 | Root | 85.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.492 |
| SRR8749028 | MeJA induced 9h | 15.131 |
| SRR8749029 | MeJA induced 9h | 24.909 |
| SRR8749030 | Uninduced | 3.493 |
| SRR8749031 | Uninduced | 0.169 |
| SRR8749032 | Uninduced | 1.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 138.725 |
| SRR8400027 | Control - Root | 149.841 |