Gene detail information of Glyur000309s00018409 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25434.1 | 4.00E-87 | nudix hydrolase homolog 10 |
| NR | KEH34089.1 | 5.96E-174 | nudix family hydrolase [Medicago truncatula] |
| COG | YP_944432.1 | 2.00E-35 | ADP-ribose pyrophosphatase [Psychromonas ingrahamii 37] |
| Swissprot | tr|Q6NPD7|NUD10_ARATH | 1.00E-107 | Nudix hydrolase 10 |
| trEMBL | tr|A0A072UW81|A0A072UW81_MEDTR | 2.00E-174 | Nudix family hydrolase {ECO:0000313|EMBL:KEH34089.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00309 | 37408 | 40881 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000309s00018409.1 | PF00293.23 | NUDIX | 118 | 238 | 1.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.419 |
| SRR1783600 | control | 0.427 |
| SRR1783602 | moderate drought stress | 0.137 |
| SRR1811619 | moderate drought stress | 0.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.364 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.254 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.580 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.444 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.750 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.669 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.574 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.759 |
| SRR2868004 | Drought Stress (root) | 11.267 |
| SRR2967015 | Control (root) | 8.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.687 |
| SRR9715740 | Leaf | 4.554 |
| SRR9715741 | Leaf | 6.544 |
| SRR9715739 | Root | 3.817 |
| SRR9715742 | Root | 7.192 |
| SRR9715743 | Root | 5.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 512.945 |
| SRR8749028 | MeJA induced 9h | 729.726 |
| SRR8749029 | MeJA induced 9h | 429.725 |
| SRR8749030 | Uninduced | 823.513 |
| SRR8749031 | Uninduced | 171.043 |
| SRR8749032 | Uninduced | 283.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.691 |
| SRR8400027 | Control - Root | 4.877 |