Gene detail

Gene detail information of Glyur000308s00025268

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79430.2	6.00E-96	Homeodomain-like superfamily protein
NR	XP_006598222.1	0	PREDICTED: myb family transcription factor APL-like isoform X2 [Glycine max]
Swissprot	tr\|Q9SAK5\|APL_ARATH	1.00E-123	Myb family transcription factor APL
trEMBL	tr\|I1MJE3\|I1MJE3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G41740.1}

Sequence

Transcript Sequence

>Glyur000308s00025268.1
AGGGTTAGCTAGCTCCTTCCCACATCCCTTCTTCAAAAACGCACCCTATTCTTTCTTTCTTTTCCCCTATTCTGCATCCGCATTTGTTCTTCTTGAATCTCTCTTTGCAAGTATTCCTTCTTTGATCAGAAGAGAGAGAGAGAGAGAGAGAATGGAGAGAATGTTCCCTCCAAAGAAGCCCTCAAGTATGAATTCACATGACAGACCCATGTGTGTTCAAGGTGACTCGGGTCTTGTCCTCACCACTGACCCTAAACCTCGTCTCCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTACTCAACTTGGAGGCCCTGACAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGGAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAACACTGCCTCCTCTTCTGCCATGATCGGCCGCAACATGAATGATAACTCACACATGGTTGATGCCATTAGGATGCAAATTGAGGTGCAGAGAAGACTCCATGAACAGCTTGAGGTACAAAAGCACCTTCAGCTAAGGATTGAGGCACAAGGGAAATACATGCAGAGCATATTGGAGAAGGCTTATCAAACACTTGCAGGTGAAAACATGGCATCTGCTGCAGCCACAAACCTAAAGGGTGTTGTTGTTGGACCTCAAGGAGGCAATCACATCCCTGANAACATGGGACTCATGAAGGAATTTGGTTCCCCAGCACTAAGTTTCTCATCATCTTTCCAAGATCTTGACATCTATGGTGGTGGTGGTGACCAAATTGACCTTCAACAAAACATGGACAAGCAATCACCCCTTGATGGGTTCTTACCAATCAACAATGANAACTTGTTGTGTCTTGGAGGGAATAATAAGAAGAGGCCTAATAACAACAACCCTTTTGGTAATAATGGGAAGAGCCCTTTGATGTGGAGTGATGATCTNAGGCTTCAGGATTTGGGGACAGCCTCATCATGCCTTCAAGATCATGACCTTGCTAATTTCAAAGGTGACCAAATCCAGATTGCACCACCAGGTGACATTGATACCATGGCAGAGATCTATGATTCAAAGCCTGTGGTGCTCCAAGGGGAAGAAAAGAAATTTGATGCTTCATCTTTGAAGCTTGAAAGGCCATCACCAAGAAGGGCACCNTTTCAGGCTGAAAGGAATATGAGTCCTATGATCAGTACTGGTANCATGGCACAAGGTAGAAACTCACCATTTGGGTGACAATAATCAATTATAGTTTAACTATTAATTTAGACCATTTTGATGCTTAATTAATTATTATGTTGTTATATGTAATTGATCACTTTGGTGCCAGTGAGATAAACTCTCTCTCTCTCTTAAGTATGATATCTAGGGTTTTGAATTTGGTCTTTGGAAATCAGTTGTTCATACGAGGGTTATTTCCTCCTCAAGTACTGTTGTTATGTGTTTGGTATAATATTTGCCTTTGCATGGCAAACCAAAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00308	165289	167867	+

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000308s00025268.1	PF00249.26	Myb_DNA-binding	37	88	2.20E-20
Glyur000308s00025268.1	PF14379.1	Myb_CC_LHEQLE	132	180	2.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.326
SRR1783600	control	8.489
SRR1783602	moderate drought stress	13.327
SRR1811619	moderate drought stress	13.390

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.286
DRR006520	Root Summer glycyrrhizin high producing strain	18.220
DRR006521	Root Winter glycyrrhizin high producing strain	4.110
DRR006522	Root Winter glycyrrhizin high producing strain	3.821
DRR006523	Root Summer glycyrrhizin low producing strain	44.025
DRR006524	Root Summer glycyrrhizin low producing strain	44.297
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.548
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.003
SRR2868004	Drought Stress (root)	22.822
SRR2967015	Control (root)	26.011

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.756
SRR9715740	Leaf	46.958
SRR9715741	Leaf	48.425
SRR9715739	Root	13.437
SRR9715742	Root	25.653
SRR9715743	Root	21.158

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.218
SRR8400027	Control - Root	21.809