Gene detail

Gene detail information of Glyur000308s00025259

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79350.1	0	RING/FYVE/PHD zinc finger superfamily protein
NR	AES77112.2	0	RING/FYVE/PHD zinc finger protein [Medicago truncatula]
COG	YP_004534171.1	7.00E-103	putative methylase/helicase [Novosphingobium sp. PP1Y]
trEMBL	tr\|G7KJ94\|G7KJ94_MEDTR	0	RING/FYVE/PHD zinc finger protein {ECO:0000313\|EMBL:AES77112.2}

Sequence

Transcript Sequence

>Glyur000308s00025259.1
CTTCTTCTTCCTCCCGAAAAACTCTCTCCCACACCGAACCGACCACTCTCTTCCCGCCAAAATGATGCAACAACAGCCGGCGCCGCCGCCGTTTCCCACCATAAGGGAGCGCTGCNTCGGTTGCCGCACGTTCCTTCACGCGGCGCCGGGGGTGTCGGAGTTACCATGCCCTCAGTGCCAAATGCCACACGCCTTCGCCGGAGCCGTCGATCCCTCCGCGGTGCGGCTTCGCTGTCCCACTTGCAAGGCCCTCGTCAATGCTCCTAGTGACCTCTCGAGGTTCCCTTGCCCTCAGTGTGGCGTTGAGCTCGATGTTCACGCCGACGGCGATGGCGTCAACGAGCTAGTTGTTGAAGTGGAGCGGGATGAAGATGATGGTGGTATGGCTGGAGAAACATTTATAGATTATCGACCGGCAAAGATATCTATNGGACCTCTGCACCCAGATCCCGTTGTGGAGACATCTTCCCTGTCTGNAGTGCAGCCACCCGAGCCTACTTATGATCCAAAGATTAAAGATGATTTGGAGTGTTCGAAGGCTTTGTCATGCTTGCAGATTGAGACATTGAGACACCTCCAACACCTTCCANATGGTGCTAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGGCTCATATGGGAGAACTGGAACCATGGGAGGAGAAAAGCCTTGTGGATTTCGGTTGGTTCGGACTTGAAGTTTGATGCCAGAAGAGATTTGGATGATGTGGGTGCAACTTGCATTGAAGTGCATGCTTTGAACAAACTTCCTTATTCTAAGCTTGAATCAAAGTCTGTTGGGGTTAGGGAGGGAGTTATTTTCTCGACATACAGTAGCCTCATAGCTTCATCTGAGAAAGGTCGCACCCGCCTCCAACAGCTTGTGCAGTGGTGTGGACCAGGGTATGATGGTCTGATCATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTCCCTGAACATGGTAAGCAGCCAACACGAACTGGTGAAGCTGTACTTGATATCCAGGCTCAACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCTACTGGTGCATCTGAATCTCGCAATATGGCATATATGGTTCGACTTGGCCTTTGGGGAGCTGGGACTTATTTCTGTAATTTTGGTGCTCTTGAAAGTGGGGGCGTTGGAGCTCTAGAACTAGTTGCAATGGACATGAAAGCCAGGGGGATGTATTTATGTCGTACACTTAGCTACAGGGGTGCTGAGTTTGAAATTATTGAAGCACCACTAGAAGATGAAATGATGGGCTTGTATAAAAAGGCAGCAGAATTTTGGGTAGATTTGCGTGATAAATTGTTGTCTGCTCTTGCCATCCTAAATGAGAAAGAGAAACCCAATTGTAGACAACTATGGAGATTATACTGGGCAAGCCACCAGCGCTTCTTTAGACACTTGTGCATGTCTGCTAAAGTCCCCGCTGCAGTGAAACTAGTGAAACAAGCATTGATGGAAGATAAGTGTGTAGTCATAGGTCTGCAGAGTACTGGGGAAGCAAGGACAGAGGAAGCTGTTTCAAAATATGGCTCTGAACTTGATGACTTTGTTTCTGGACCTCGTGAATTGCTGCTAAAATTTGTTGGAGAAAATTACCCATTGCCAGAAAAGCCGGAACTTCTTCCAGGAGACGATGGTGTAGAGGAGCTTCAAAGGAAGAGGCACTTGGAAAGTCNTGATGTTTCGGTAAAAGCAAGAGTAAAAAAGGTAGCGAAGATGCAGCNTCCTTGTGATGCTGAAAGTGATGAAGAATCTGAAACTTCTTCTGCTCTTGAAACTTCTGATTCTGATTACGGACCAGAAGGGGACGAGAGTGCTGCCTCGGCTCTTGAATCTAGTGACTCTGATTATGATGAGTTTCAGACATGTGAAATCTGCAGTACTGAAGAGTTAGGAGGTCCTGACAAAGTTGCAGAAATGACAGGAAGAAAAGGCATGCTTGTGAGGGCCCCTAGTGGAATGGGTGTGAATTATCAGACTCGTCATACAAAAGATGTCACTATTGAGATGGTCAACATGCATGAAAAGCAGCTCTTTATGGATGCAAGGAAGTTAGTGGCGATTATCTCTGAAGCTGGATCAGCTGGTGTTTCGTTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCATATAACTCTAGAACTTCCATGGAGTGCNGACCGAGCAATTCAGCAGTTTGGAAGAACGCATCGGTCAAATCAAGTTTCAGCACCAGAATACAGGTTACTATTTACTAACCTTGGTGGAGAACGCCGATTTGCATCAGTTGTTGCCAAGAGATTAGAATCCCTCGGGGCTTTGACTCAGGGGGACCGCAGGGCTGGACCTTCATTAAGTGCTTACAATTATGATAGTGCTTATGGAAAGAGGGCTCTGATCACTCTGTACAAAGGAATAATGGAGCAGGATTCTCTTCCTGTTGTACCTCCAGGATGCTTATCAGACAGACCAGATACAATCCAAAGTTTTATTATGCAGGCACAAGATGCTCTTATATCTGTTGGAATTGTTAGGGGCACCATTCATGGTAATCTTGACACAGGCATTGTTGGCTTGAAAGCTAATGTCATTGAACTGCAAGGGACTCCAAAGACAGTCTATGTTGATCAAATGAGTGGGGCTTCAACTGTTCTGTTCACATTCAAGTTGGATCGTGGNGTCTCATGGGAGTTGGCAAATACCATGCTGACTGAGAAGCAGAAGGATGGGCTCGGTTCATCCAATGTTGGTTTCTACAAGTCCAAGAGGGAGTGGTTGGGAAGACGTCATTTCATTTTAGCATTTGAAAGTTCTGCTTCGGCTATGTATAAGATAGTTCGTCCCCATGTCGGAGAATCCCCTCGGGAGATGCATCTGGCAGAACTGAAAAGAAAATATACAAAGGTTTCATCATTAGAGGAGGCTCAAACTGGTTGGGAAGAGGATTATGAAGCTTCATCTAAACATTGCATGCATGGNCCCAATTGTAAGCTCCGCAAGTTCTGTTCAGTTGGCTCAAGAGTACAGAAAGTAAATGTCNTAGGTGGCGTCATTCTTCCTGTTTGGGGAAGCATAGAAATAGCTCTCTCTAAGCAGGCCCGTCAAAGCCATAAGAGGTTACGNGTTGTTCGTATAGAAACTACGTCAGATAACCAACAAACTGTTGGGCTTCTTGTTCCTAATGCAGCAGTTCAAACTGTGCTTCAAGGTTTAGCTTGGGTTCAGGAAGTTGATGATTGATTTGAGACACCAGACTTCCCTCACTTTTTTGTAGTTCACAACCAGTTTATGTTTNAGGAAACGACTCAAGCTTCTTGCTGAATTTTTTGGAAGGGATTGACTCGTTCTCTCTGTGAGATGCTACACATTTGCAGNGTCTTCTTTTCAATATTTTGATCGTATCACCCATTTTTTGGTTTATAATTCAAAATTGTATATTTGTAAAGGTGATCACTGACAAAATGAAATACAATAGACGACTTGGCTGTCACATATGGTATAGTTCGGTATGAACTCGATTGTATCAGATGCTACACATTATCATTGTCATTGAAATCATAGATAAAATACA

Protein Sequence

>Glyur000308s00025259.1
MMQQQPAPPPFPTIRERCXGCRTFLHAAPGVSELPCPQCQMPHAFAGAVDPSAVRLRCPTCKALVNAPSDLSRFPCPQCGVELDVHADGDGVNELVVEVERDEDDGGMAGETFIDYRPAKISXGPLHPDPVVETSSLSXVQPPEPTYDPKIKDDLECSKALSCLQIETLRHLQHLPXGARAGFFIGDGAGVGKGRTIAGLIWENWNHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLESKSVGVREGVIFSTYSSLIASSEKGRTRLQQLVQWCGPGYDGLIIFDECHKAKNLVPEHGKQPTRTGEAVLDIQAQLPEARVVYCSATGASESRNMAYMVRLGLWGAGTYFCNFGALESGGVGALELVAMDMKARGMYLCRTLSYRGAEFEIIEAPLEDEMMGLYKKAAEFWVDLRDKLLSALAILNEKEKPNCRQLWRLYWASHQRFFRHLCMSAKVPAAVKLVKQALMEDKCVVIGLQSTGEARTEEAVSKYGSELDDFVSGPRELLLKFVGENYPLPEKPELLPGDDGVEELQRKRHLESXDVSVKARVKKVAKMQXPCDAESDEESETSSALETSDSDYGPEGDESAASALESSDSDYDEFQTCEICSTEELGGPDKVAEMTGRKGMLVRAPSGMGVNYQTRHTKDVTIEMVNMHEKQLFMDARKLVAIISEAGSAGVSLQADRRVRNQKRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYRLLFTNLGGERRFASVVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALITLYKGIMEQDSLPVVPPGCLSDRPDTIQSFIMQAQDALISVGIVRGTIHGNLDTGIVGLKANVIELQGTPKTVYVDQMSGASTVLFTFKLDRGVSWELANTMLTEKQKDGLGSSNVGFYKSKREWLGRRHFILAFESSASAMYKIVRPHVGESPREMHLAELKRKYTKVSSLEEAQTGWEEDYEASSKHCMHGPNCKLRKFCSVGSRVQKVNVXGGVILPVWGSIEIALSKQARQSHKRLRVVRIETTSDNQQTVGLLVPNAAVQTVLQGLAWVQEVDD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00308	57199	80293	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000308s00025259.1	PF13872.1	AAA_34	127	418	3.80E-112
Glyur000308s00025259.1	PF13871.1	Helicase_C_4	625	837	5.00E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.633
SRR1783600	control	2.646
SRR1783602	moderate drought stress	3.436
SRR1811619	moderate drought stress	3.404

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.603
DRR006520	Root Summer glycyrrhizin high producing strain	2.449
DRR006521	Root Winter glycyrrhizin high producing strain	3.503
DRR006522	Root Winter glycyrrhizin high producing strain	3.533
DRR006523	Root Summer glycyrrhizin low producing strain	2.365
DRR006524	Root Summer glycyrrhizin low producing strain	2.308
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.657
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.641

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.912
SRR2868004	Drought Stress (root)	7.247
SRR2967015	Control (root)	7.069

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.191
SRR9715740	Leaf	2.362
SRR9715741	Leaf	2.860
SRR9715739	Root	1.076
SRR9715742	Root	4.353
SRR9715743	Root	4.191

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.307
SRR8749028	MeJA induced 9h	9.764
SRR8749029	MeJA induced 9h	3.732
SRR8749030	Uninduced	1.125
SRR8749031	Uninduced	0.793
SRR8749032	Uninduced	0.929

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.571
SRR8400027	Control - Root	6.968