Gene detail information of Glyur000308s00025253 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07400.1 | 4.00E-22 | HSP20-like chaperones superfamily protein |
| NR | XP_003545943.1 | 4.87E-70 | PREDICTED: 17.8 kDa class I heat shock protein-like [Glycine max] |
| COG | YP_005887446.1 | 4.00E-16 | heat shock protein Hsp20 [Marinobacter adhaerens HP15] |
| Swissprot | tr|P04793|HSP13_SOYBN | 1.00E-31 | 17.5 kDa class I heat shock protein |
| trEMBL | tr|K7ME23|K7ME23_SOYBN | 2.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G41880.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00308 | 36681 | 37208 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000308s00025253.1 | PF00011.16 | HSP20 | 38 | 154 | 1.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.928 |
| SRR1783600 | control | 1.919 |
| SRR1783602 | moderate drought stress | 5.372 |
| SRR1811619 | moderate drought stress | 6.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.212 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.494 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.322 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.632 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.497 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.738 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.886 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.302 |
| SRR2868004 | Drought Stress (root) | 0.479 |
| SRR2967015 | Control (root) | 0.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.551 |
| SRR9715740 | Leaf | 1.251 |
| SRR9715741 | Leaf | 1.677 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.546 |
| SRR9715743 | Root | 0.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.435 |
| SRR8749029 | MeJA induced 9h | 0.007 |
| SRR8749030 | Uninduced | 0.111 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.062 |
| SRR8400027 | Control - Root | 3.013 |