Gene detail

Gene detail information of Glyur000307s00023022.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G73370.1	sucrose synthase 6
NR	XP_003600643.1	Sucrose synthase [Medicago truncatula]
COG	YP_003529337.1	sucrose synthase [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|Q9FX32\|SUS6_ARATH	Sucrose synthase 6
trEMBL	tr\|G7J800\|G7J800_MEDTR	Sucrose synthase {ECO:0000256\|RuleBase:RU280817}

Sequence

Transcript Sequence

>Glyur000307s00023022.1
CCAACATANAGCCATCACACAAGGAGACCGAAAGAAGAAAAGAATGATACCAATAATTCCCAGTTAGAAATACCCTTCACATTGGCCTTTGCAAAAATGTTCTTTCTCCCACTCTTGCACCAAATGCATGGGGCCCAGTTTCACTCAGAAAATTGTTATTATCTCAAGAACCATAATGCACATGTATAGTTAAATAGCCATGCATATAAACTGAGACACTTGATCTCCTTAGAGAGCAGCAACCATATATACCATCTTTCAATTCCTTATTATCATTACCTCTTTGGTTGAAATGGCTTCTACACCAGGCTTGAAGCGCACAGAATCGATGACGGATCATAACATGGCAGATGCATCGAAGCAGAGTAGGTACCACAAGAGGAGGTGCTTTGCCAAGTACCTTGAGAANGGTAGAAGGATTATAAAACTTCATCACTTGATGGAAGAAATGGAGCAAGTTATAAATGACAAGAGTGACAGGAATCAAATATTGGAGGGCAATCTTGGCTTCTTATTGAGTTATACACAGGAAGCTGTTGTTGATCCACCATATGTTGCCTTTGCAGTGAGGTCAGATCCTGGAGTTTGGGAATTTGTAAGAGTGAGCTCTGAGAACCTTTCAGTTGAACCTCTCACCTCCACGGATTACCTCAAATTCAAGGAAAGAATATACGATGAAAAATGGTATGTAGTTTACATATTGGATCAAGTTAGAGCTCTAGAAGAAGAATTGCTACTCAAAATTAAGCAACAAGGCCTAAGTGTGAAGCCTCAAATTCTTGTGGTCACAAGGCTCATACCTGATGCTCAAGGAACCAAGTGTAATCAAGAGTTGGAATCAATCAATGGTACCAAGCACTCCAACATTCTACGCGTGCCTTTTCTGACAGATAAAGGAATCTTGCGTCAATGGGTTTCTCGCTTTGACATTTATCCTTATCTTGAGAGGTTTACTCAGGATGCCACAACCAAGATTCTCAACCTTATGGAAGGAAATCCAGATCTTATTATTGGAAATTACACTGATGGAAATTTGGTAGCATCTCTTATGGCTAGCAAACTTAGGATAACTCAGGGAACTATAGCACATGCTTTAGAGAAGACTAAGTATGAAGATTCAGATGTCAAGTGGAAAGAATTAGACCCTAAGTATCACTTCTCATGCCAATTCATGGCTGATACAATTGCAATGAATGCATCAGATTTTATCATAAGCAGCACATATCAAGAAATTGCCGGAAGCAAAGATAAGCCTGGACAATATGAAAGTCATGCTACATTTACACTCCCAGGGCTCTGTAGGGTTGTTTCAGGGATAAATATATTTGATCCCAAGTTCAACATAGCTGCACCTGGAGCTGACCAGTCTGTCTATTTTCCTTACACAGAGAAAGACAAAAGACTCACTCAATTTCATCCTGCCATTGAAGACTTACTATATAGTAAAGGGGATAACAAAGAGCATATTGGATATCTAGAAAATAGAAGAAAACCCATCATCTTCTCAATGGCAAGGCTTGATGTTGTGAAGAATTTAACCGGGTTAGTTGAATGGTATGGGAAGAACCAGAGATTGAGAAGCCTAGTGAACCTTGTCATAGTTGGAGGCTTCTTTGACCCNTTGAAATCCAAAGACAGGGAAGAAATGGGAGAAATAAGAAAGATGCATGATTTAATTGGAAAGTACCAACTCAAGGGTCAATTNAGATGGATTGCTGCACAGACCGATAGGCATCGCAACGGAGAGCTCTACCGTTTTATTGCNGACACAAAGGGAGCTTTTGTGCAACCTGCTTTGTATGAAGCATTTGGCCTTACTGTCATTGAAGCAATGAACTGTGGTTTGCCTACTTTTGCTACTGACCATGGAGGTCCAGCAGAAATTATTGTTGATGGGATCTCTGGTTTCCATATTGATCCCCTCAATGGAGAAGAATCAAGCAACAAAATTGCTGATTTCTTTGAAAAATGCAAAGTAGATTCAATACATTGGAACGTGATTTCGGCAGCCGGATTGCAACGCATAAATGAATGCTATACCTGGAAGATCTATGCAAACAAGTTGTTGAACATGGGAAGCATTTATACCTTTTGGAGGCAAGTGAATAATAAGCAAAAAGAGGCAAAGCAAAGATACATTCGGATGTTCTATAATCTTATNTTCAAGAATTTGGTGAAGACTATACCTATTCCAAGTGATGAACCTCAACAACCAGTGTCCAAGCAGCAAAGTCTCAAAAAACAGGGAACAAGCAGACGTTCAAAGTCCAGATTGCAAAGTTAAGATTAACTTATTTTCAGCTGTGTAACAGCTTATTCAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00307	128016	134670	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00695	E2.4.1.13	EC:2.4.1.13	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005985 sucrose metabolic process

GO:0009058 biosynthetic process

molecular_function
GO:0016157 sucrose synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000307s00023022.1	PF00862.14	Sucrose_synth	19	128	9.90E-23
Glyur000307s00023022.1	PF00862.14	Sucrose_synth	132	384	1.50E-129
Glyur000307s00023022.1	PF00534.15	Glycos_transf_1	390	558	2.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.758
SRR1783600	control	0.909
SRR1783602	moderate drought stress	0.463
SRR1811619	moderate drought stress	0.466

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.150
DRR006520	Root Summer glycyrrhizin high producing strain	3.059
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.046
DRR006523	Root Summer glycyrrhizin low producing strain	6.311
DRR006524	Root Summer glycyrrhizin low producing strain	6.281
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.762
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.713

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.635
SRR2868004	Drought Stress (root)	7.219
SRR2967015	Control (root)	5.921

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.451
SRR9715740	Leaf	0.055
SRR9715741	Leaf	0.260
SRR9715739	Root	0.048
SRR9715742	Root	0.541
SRR9715743	Root	0.610

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.007
SRR8749028	MeJA induced 9h	0.015
SRR8749029	MeJA induced 9h	0.052
SRR8749030	Uninduced	0.006
SRR8749031	Uninduced	0.224
SRR8749032	Uninduced	0.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.586
SRR8400027	Control - Root	1.798