Gene detail

Gene detail information of Glyur000307s00023019

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65920.1	0	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
NR	XP_006602026.1	0	PREDICTED: uncharacterized protein LOC100797223 isoform X1 [Glycine max]
COG	YP_002462041.1	2.00E-33	chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q9FN03\|UVR8_ARATH	8.00E-45	Ultraviolet-B receptor UVR8
trEMBL	tr\|K7MPW4\|K7MPW4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G05030.2}

Sequence

Transcript Sequence

>Glyur000307s00023019.1
TTCAGATAGAGAGAGATAAAGAGAGAGAGAGAGAAGCATCTTTCTCTGCATTCTTACAACTATTATCAATCATTTTTTGCTGTTAACGATAAGGTTCCACTTCCACCACCTGGTGGGAAAACCAAGGACTCCCTTCTGTTTCCTTTGTCTGCCATTCTCTCTTCCATGAAAAAACTACAACAACATGACAATGGGAGAAGAGTCCTTGGCATCAGTCCCATTTGATAGAGCTGTTGAACAGGCAATTGTGTCTATAAAGAAAGGTGCATATTTGCTAAAGTGTGGTCGTAGAGGAAAGCCAAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATTTGGTGTTCAGGGCAGCAGGAAAAGCATTTGCGATTGAGTGCAGTTACAAAAATTATTCAAGGGCACGGAAATATAAGGCCCCAGAGGCAAAATGAAACCGATAAGGAGTGCCATTCATTCTCACTAATCTATGCTAATGGTGAACGCTCCCTTGATCTGATATGCAAGGACAAGGCACAGGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCAAGGTGCCAGAATCCTAGAACTTTAAGTAGTTTAAGAAGCTGCAAGGGGGTGCAGAGTTGTGTCAGTAGTCCAGCTGGAATTTTCCGAAGAAAGAAAAATCTTGGCCTTCTAGATGAAACCTCTCAATTTGCTCAGGTACATAGCTTATGTCCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCAGATGGCTTGTCATATAAATCTGATAACTTTTATTCATCGGCATCTTTCCTCGCCAGCACTCATGGCATAATAACAGATAATTCAGTCCCAAATTCTCCATATATTGATCCAGATATTCATAGCAACATTGAATCAACTCGTTTTGACAAGGAGTACAAGAAGGATTTGTCCTATANGCCTCTCATGCCTCCTACCTCCCCGCACGTAGGAAACAACAATGTATTGAAGGATGTAATGATATGGGGTGGAGAGCTTGGATGTCTTATAGGGATTGTAAATGAAAGGTTTGTCCAACATGGAATTTATTCCTTAGTGCCAAAGTTACTGGAATCCACTGCAATGTTAGATGTACAAAATGTAGCTTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTTTGCTGGGGTCAAGGGAAGTGGGGAAGGCTGGGGCAAAGAATTGATATGGACATTAGCTCCCCCAAATTAGTTGATTCTCTCAGTGGCATTCATGTAAAACATGTTGCCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCAGGTGAAGTATATACATGGGGAAGTGATGTTAGTTGTTCAGATTTTGTTGATGAAGGGAGAATAAGAAGTCAGTGGATACCACATAAACTTTCTGGACCTTTAGATGGTATTAGTATTTCAAGTATTGCTTGTGGGGAATGGCACACTGCGATTGTCTCTGGCTGTGGCCGGTTATACACATATGGAGATGGTACATTTGGAGTTCTTGGGCACGGCGATCATCGGAGCTACTCTAGACCAAAAGAAGTTGAATCTCTTAAAGGTCTACGGGTGAGATCTGTTGCTTGTGGATCATGGCATACAGCTGCTATTGTTGATGTCATGTTTGACCGTTATAGGTACAATACTACTACTGGCAAGTTGTTTACATGGGGTGATGGAAATGAAGGGAGGCTTGGTCATACTGATAATGGAAGCAAGCTTGTACCAACATGTGTTTCACAACTAGTTGACTATGATTTTGTTCAAGTATCCTGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGTAAGGTTTTCGCAATAGGGAGCGCAAAACATGGACAATTGGGAACTCCACATGCCAGGGAACATAAAGCAGTCATGGTTGAAGGACAGCTTAAACAAGAGTTTGTTAAAATGATATCATCCGGTTCATATCATGTTGCTGTTTTGACATCTGCAGGGAGTGTATATACATGGGGCAAAGGTGAAAATGGACAACTTGGGCTAGGTGATACGGAAGACAGATGCACACCTTCTTTTGTTGAGGCTCTAAGAGACAGGCAGGTAGATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATATGTTTGCACAAGCCTATTTCCATTAGTGACCAGTCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGCCTTTCGTTCTGCCGCGCTTGTAGTAGTAAAAAGGTTATCAATGCATCTCTAGCCCCAAGTAAGAGCAAGGCCTTTCGCGTCTGTGATCAGTGCTTTGATAGACATCAAGGAGGCACACATTCTGCTACGGCATCGAAATCCAGAAATTACAACAACAATCAGCAGCAGATGCTGAGGCATCAGAACAAGATTGGTGATCTCACTGAGGATAGGGGAGAAACAACTGTGACACATGGTCCTCTATTGTCTCTCAGTCAATCATGTTACAGGAAAAGCATGCCTAGTGGAAGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCAGGATTTAAAAGATAGTTCTTCTCCTATGTTAGGTGGGGTGCCACAATGGGGACAAGTTCCATGCCCAGCACTATTTAGAATCAATTGTACAGAAAACTCAGTTGTGCATGATTCTTCAACCAAAAGTAAATTAGCTGCTGTTTCACCACTGAATGTAGAATCTGCAGTTAACAACTTCCCCAATGCAGAGACAGATACAACGAAGTCTGATAATGATAAGATGCTCATAGATGAAGTTCAGAGGCTGAGAGCTGAGGCTAGGAGACTTGAAAAGGAATGTGAGCTCAAAAACCATAAAATCCAGGAGTGTCAACAAAAAATTGAAGAGAGTTGGTTCGTAGCAAAAGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACAATATCAGGAAAAGATAATGCTGGACAAGAAGGAAAGGTTGGGCTACAGGAATTTCTTCCCAATTTGGCACCCATACAGACAGAAATGAATAGTCCAAGAGATTGCAACATGGACAGTCTATCCAGTTCCCCTATAGTATTCTCTGACACATTAAAATCCAAATTTGGGAGAAGTATGCTCCTAAAAAATAATGACAAATTGATGGAGAACTCTAACTTCACTAGAGCAGCAGTATCTCAACAAGACACTGCCAATGACTTGAAGGTGGAATGGGTAGAACACCGGAAGAGATTCTCACAGAAGGAAGCTGAAAGGTGGTGGGAAGAGAATCAAGCAACAGTGTACCATAAGTATGAGATTGAAGGATATCTAAATACTAGCCAAAGTCAGTTGAAAGGCTAA

Protein Sequence

>Glyur000307s00023019.1
MTMGEESLASVPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSAVTKIIQGHGNIRPQRQNETDKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQNPRTLSSLRSCKGVQSCVSSPAGIFRRKKNLGLLDETSQFAQVHSLCPSPTLSLSERCFSDGLSYKSDNFYSSASFLASTHGIITDNSVPNSPYIDPDIHSNIESTRFDKEYKKDLSYXPLMPPTSPHVGNNNVLKDVMIWGGELGCLIGIVNERFVQHGIYSLVPKLLESTAMLDVQNVALGGKHAALVTKQGEVFCWGQGKWGRLGQRIDMDISSPKLVDSLSGIHVKHVACGEYHTCALTDSGEVYTWGSDVSCSDFVDEGRIRSQWIPHKLSGPLDGISISSIACGEWHTAIVSGCGRLYTYGDGTFGVLGHGDHRSYSRPKEVESLKGLRVRSVACGSWHTAAIVDVMFDRYRYNTTTGKLFTWGDGNEGRLGHTDNGSKLVPTCVSQLVDYDFVQVSCGRMLTVALTNMGKVFAIGSAKHGQLGTPHAREHKAVMVEGQLKQEFVKMISSGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRCTPSFVEALRDRQVDTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLSFCRACSSKKVINASLAPSKSKAFRVCDQCFDRHQGGTHSATASKSRNYNNNQQQMLRHQNKIGDLTEDRGETTVTHGPLLSLSQSCYRKSMPSGRKDWKNQQESQQDLKDSSSPMLGGVPQWGQVPCPALFRINCTENSVVHDSSTKSKLAAVSPLNVESAVNNFPNAETDTTKSDNDKMLIDEVQRLRAEARRLEKECELKNHKIQECQQKIEESWFVAKEEAAKCKAAKEVIKALALRLHTISGKDNAGQEGKVGLQEFLPNLAPIQTEMNSPRDCNMDSLSSSPIVFSDTLKSKFGRSMLLKNNDKLMENSNFTRAAVSQQDTANDLKVEWVEHRKRFSQKEAERWWEENQATVYHKYEIEGYLNTSQSQLKG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00307	105574	111579	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000307s00023019.1	PF00415.13	RCC1	324	372	1.40E-13
Glyur000307s00023019.1	PF00415.13	RCC1	431	479	1.40E-12
Glyur000307s00023019.1	PF00415.13	RCC1	494	542	6.50E-14
Glyur000307s00023019.1	PF00415.13	RCC1	598	646	2.90E-14
Glyur000307s00023019.1	PF01363.16	FYVE	656	714	3.90E-12
Glyur000307s00023019.1	PF13713.1	BRX_N	903	927	3.50E-07
Glyur000307s00023019.1	PF08381.6	BRX	1020	1044	3.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.716
SRR1783600	control	3.769
SRR1783602	moderate drought stress	4.255
SRR1811619	moderate drought stress	4.106

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.682
DRR006520	Root Summer glycyrrhizin high producing strain	2.763
DRR006521	Root Winter glycyrrhizin high producing strain	0.430
DRR006522	Root Winter glycyrrhizin high producing strain	0.366
DRR006523	Root Summer glycyrrhizin low producing strain	3.418
DRR006524	Root Summer glycyrrhizin low producing strain	3.290
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.267
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.259

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.414
SRR2868004	Drought Stress (root)	1.487
SRR2967015	Control (root)	2.236

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.981
SRR9715740	Leaf	0.538
SRR9715741	Leaf	0.999
SRR9715739	Root	0.186
SRR9715742	Root	2.436
SRR9715743	Root	1.589

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.366
SRR8749028	MeJA induced 9h	4.973
SRR8749029	MeJA induced 9h	1.968
SRR8749030	Uninduced	0.548
SRR8749031	Uninduced	0.083
SRR8749032	Uninduced	0.091

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.238
SRR8400027	Control - Root	6.958