Gene detail

Gene detail information of Glyur000307s00023018

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03220.1	7.00E-87	expansin A13
NR	XP_003600633.1	1.04E-156	Expansin [Medicago truncatula]
Swissprot	tr\|Q9M9P0\|EXP13_ARATH	9.00E-128	Expansin-A13 (Precursor)
trEMBL	tr\|G7J7Z0\|G7J7Z0_MEDTR	4.00E-157	Expansin A1 {ECO:0000313\|EMBL:AES70884.1}

Sequence

Transcript Sequence

>Glyur000307s00023018.1
ATCCAATCAAAATCCAGTTTTACATATTCATTTAAACAATTAGATTGATTTGACAAAAAAAAAAACAATTAGATTGATTGCTATGCACGTGCAACAGTTATAATAAGAAGAAGGTAAAATGCAGTAAAAAAAAAAACACAACCAAACAAAGAAATGGAAGCACAGAAATACTTGTTCAAACGTGATGGGTGTGTGAACATGATTGGGGGGATTTGATTTGCATCATCTCCGCCTCTCTCCTTGGATACATTCACACACACTCCCTCTCCAATCTCAACCTCCAAAACCATAAAAAACAAAGGCAAAAAGCCAATGTCACTTGGTGTGTTGATCTCCATTTATGACACCACCACCACCACCACNACGATCCAACTAACTATTCTTTTACTCACACTCACTCTACTCACTTCACCAGCAGCCTCTACATCTCATAATTATTACTCTCCATCACCCCCAGCCGCCCCATTCTCCGAACCTTCTCCCCCCGAATCTCCCTCTCCCCACGCCGAAGAATGGCTCTCCGCACGCGCCACCTACTACTCCTCCGTCGCCGACGACCCCGGACTTGGAGGCGCGTGCGGCTACGGCGACCTCCTCAGGGACGGTTACGGCCTGGCCACCGCCGCGCTAAGTGAGGCACTGTTCGGCCGCGGCCAGATCTGCGGCGCGTGCTTCGAGCTCCGCTGCTTGGAGGAGGAAACCCCCTTCGACCGGCGGTGGTGCATCGCCGGCACCACCGTCGTCGTCACCGCCACCAATTTCTGCGCCCCGAACTACGGTTTCGACGCTGAGAGCGGCGGCGGACATTGCAACCCTCCGAAGCAGCATTTCGTGCTCCCCATTGAAGCCTTCGAGAAGATCGCCATTTGGAAAGCCGGAAACATGCCCGTGCAGTTTCGGAGGGTAAAGTGCAGAAGGGAAGGGGGAATGCGGTTTACGGTAACTGGTTCTGGTATCTTCATTTCGGTGCTGATCAGTAACGTGGCCGGCATAGGAGACATTGTTGGTGTGAAGGTTAAGGGTTCAAGAACTGGTTGGCTTCCTATGGGTCGCAACTGGGGCCAAAATTGGCATGTAAATGCGTTATTGCAAAACCAACCTCTTTCATTTGAGGTTACCGCTAGTGATGGAGTAACACTTACATCCTACAATGTTGCTCCCAAGAATTGGAGCTTTGGACAAACCTTTGAAGCCAAGCAATTCCAACCCTAAAAAGCTTAACGAACAAAATAAACAGGTCTAGGTGGCATGGTATTAATGGTACCCCATCANTTTTTTTTGTGTTTTTTATGAGGTTTGTACAATGGTTACTGTAGAAGTTGTGAGAACTGGATGACCGTTATTCTCATCTCATCATATACCAAAATCATTTGGAATATTTTCCTACCGTTAATAAATGTTTATGAAAAGGTGATGTGAATCGTGTCACCAATATTGTATTTATGAATTGATATTTACATAAGCAGCTACATTCTTGCGAGCGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00307	72729	87465	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009664 plant-type cell wall organization

cellular_component
GO:0005576 extracellular region

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000307s00023018.1	PF03330.13	DPBB_1	103	195	1.50E-19
Glyur000307s00023018.1	PF01357.16	Pollen_allerg_1	206	283	4.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.335
SRR1783600	control	10.098
SRR1783602	moderate drought stress	4.007
SRR1811619	moderate drought stress	4.209

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.763
DRR006520	Root Summer glycyrrhizin high producing strain	4.972
DRR006521	Root Winter glycyrrhizin high producing strain	0.149
DRR006522	Root Winter glycyrrhizin high producing strain	0.110
DRR006523	Root Summer glycyrrhizin low producing strain	1.692
DRR006524	Root Summer glycyrrhizin low producing strain	1.761
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.808
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.880
SRR2868004	Drought Stress (root)	1.274
SRR2967015	Control (root)	1.534

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.459
SRR9715740	Leaf	0.468
SRR9715741	Leaf	0.610
SRR9715739	Root	2.481
SRR9715742	Root	1.899
SRR9715743	Root	2.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.743
SRR8749028	MeJA induced 9h	1.166
SRR8749029	MeJA induced 9h	0.639
SRR8749030	Uninduced	0.096
SRR8749031	Uninduced	0.104
SRR8749032	Uninduced	0.095

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.660
SRR8400027	Control - Root	11.422