Gene detail information of Glyur000307s00023016 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17300.1 | 1.00E-46 | Homeodomain-like superfamily protein |
| NR | XP_003553057.1 | 1.51E-171 | PREDICTED: protein LHY [Glycine max] |
| Swissprot | tr|F4KGY6|RVE1_ARATH | 1.00E-59 | Protein REVEILLE 1 |
| trEMBL | tr|I1MZI3|I1MZI3_SOYBN | 6.00E-172 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G05050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00307 | 66732 | 70206 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000307s00023016.1 | PF00249.26 | Myb_DNA-binding | 60 | 104 | 5.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.585 |
| SRR1783600 | control | 3.493 |
| SRR1783602 | moderate drought stress | 4.791 |
| SRR1811619 | moderate drought stress | 4.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.093 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.919 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.153 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.702 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.398 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.471 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.880 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.794 |
| SRR2868004 | Drought Stress (root) | 15.800 |
| SRR2967015 | Control (root) | 14.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.993 |
| SRR9715740 | Leaf | 23.736 |
| SRR9715741 | Leaf | 15.911 |
| SRR9715739 | Root | 4.910 |
| SRR9715742 | Root | 9.672 |
| SRR9715743 | Root | 8.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.912 |
| SRR8749028 | MeJA induced 9h | 15.693 |
| SRR8749029 | MeJA induced 9h | 3.622 |
| SRR8749030 | Uninduced | 2.147 |
| SRR8749031 | Uninduced | 1.009 |
| SRR8749032 | Uninduced | 1.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.359 |
| SRR8400027 | Control - Root | 14.406 |