Gene detail information of Glyur000307s00023012 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10710.1 | 3.00E-59 | global transcription factor C |
| NR | XP_007146981.1 | 2.55E-93 | hypothetical protein PHAVU_006G0865000g, partial [Phaseolus vulgaris] |
| Swissprot | tr|Q7X923|SPT16_ORYSJ | 2.00E-69 | FACT complex subunit SPT16 |
| trEMBL | tr|V7BQX3|V7BQX3_PHAVU | 1.00E-93 | Uncharacterized protein {ECO:0000313|EMBL:ESW18976.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00307 | 14393 | 17393 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000307s00023012.1 | PF00557.19 | Peptidase_M24 | 14 | 154 | 8.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.409 |
| SRR1783600 | control | 8.607 |
| SRR1783602 | moderate drought stress | 12.807 |
| SRR1811619 | moderate drought stress | 13.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.836 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.130 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.072 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.557 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.414 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.800 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.250 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.489 |
| SRR2868004 | Drought Stress (root) | 6.371 |
| SRR2967015 | Control (root) | 7.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.449 |
| SRR9715740 | Leaf | 1.597 |
| SRR9715741 | Leaf | 1.845 |
| SRR9715739 | Root | 0.424 |
| SRR9715742 | Root | 4.113 |
| SRR9715743 | Root | 4.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.995 |
| SRR8749028 | MeJA induced 9h | 7.140 |
| SRR8749029 | MeJA induced 9h | 2.156 |
| SRR8749030 | Uninduced | 1.705 |
| SRR8749031 | Uninduced | 1.967 |
| SRR8749032 | Uninduced | 1.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.847 |
| SRR8400027 | Control - Root | 3.679 |