Gene detail

Gene detail information of Glyur000306s00014040

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07880.1	7.00E-35	Immunoglobulin E-set superfamily protein
NR	XP_003537087.2	9.68E-98	PREDICTED: rho GDP-dissociation inhibitor 1 isoform X1 [Glycine max]
Swissprot	tr\|Q9SFC6\|GDIR_ARATH	2.00E-42	Rho GDP-dissociation inhibitor 1
trEMBL	tr\|K7LHC1\|K7LHC1_SOYBN	4.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G04510.2}

Sequence

Transcript Sequence

>Glyur000306s00014040.1
GAGGGAAGGAAGAAAATATAGAAGCAGAGGATTAGGAAGCAGCCAGAGATATGTGTACACATGTGGGACACAGACAGGCAGGGGGGAATGTGAAGGACAGGCGGTGAATATACTATTCATACGTTGTACTTCAAATATACTGACAATCAATACACCTTCCTCTGTTTTCCTTGTGTTTGTTTGAGTGTTCGAATATTGCCGGAAAAGACTCCACTGAGAACAGAAAAAGAGCAGCTTCTCTACTTGTGTTCACTAATTCACTTTGTGGTTGGGGTGTCATAAGCATAATCACAGAGAGAGAGAGAGAGAGAGAGATGGAGGGTGGGAAGTGGAAGAGAGAAGAGGAAGAAGCAGGGCCATCATCTGTCCTCTCTTCTGCTTCTGGGATTGAAAAAACTGAGGATGAGGAAGAAGATGAAAAAGAAGACACTAATGATCATAAAAATAGCACCTTTGTTCCTGGTCCTCTTCTCTCTCTCAAGGACCAGATCGATCGGGACAAGGAGGATGACAGCCTAAGGAGGTGGAAAGAGAAGCTCTTGGGTTGCTTGGAAAGTGATTTAGATGGTCAATTAGATCCTGAAGTGAAGTTCCACTCCATTGGAATGATATCTGAGGATTTTGGTGAAATCGTTACTCCTTTGCCCGTGGATGAAGAAAACCATAATGGTCATATTCTATTCACTCTCAGGGAGGGGTCTCGTTATCAGCTCAAGCTGAAATTTATTGACCAGAGCAAAGGAATGTTGGGTACCTTTGCTCCTCAAAAGGAACCATATATACATGCCTTGAAAGAGGAGATCACTCCATCTGGTGCGCTTGCAAGGGGTGTCTACTCAGCCAAACTCAAGTTTGAAGATGATGACAGAAAGTGTCACATGGAACTCAAATATTCATTAGAGATAAAGAAGAGCAGCTAGCCAGGGTTTATGGTACATTTTGTCTCTCTAAATTATGTGCTATAATTTTGAAACTATTTGCTAATTATGCTATGTAGTAAGGTTCTGCTTGGGTTCAGCCCAATTTTTAGTTTACGAAGGAGTTAACTTTGCTTATATTCTTATTTTTCTTATCACTAGTCGTTATTAAATAATTAGGTGCTTAGAAAACAGACACNGCAGCCATGGCTATTCCACCATTGGCATTTTGGCAACTCATGTTAAGCACNATGACATTTGTACGCAAACAATCCACAAGAATGTGTATGAATAGTTTGAAAATTCACAATTATGATTTGTATGTGTAATATCTCAAGTAATTGAAAAGAACTTTGCATCTCTAATTCTCTATCAAAATAACATGATTGAGGTCCCACTTCGTGGTAGTAAGATAAACTGAAGGCTTCAAAGGTGGCATGAAAAAGAAGCATCACCAATTCACTTATGACAAGTTTGACCATTGGTGGAAAACAACAGAGCAGGCACTGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00306	195505	198062	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005094 Rho GDP-dissociation inhibitor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000306s00014040.1	PF02115.12	Rho_GDI	27	137	6.00E-27
Glyur000306s00014040.1	PF02115.12	Rho_GDI	138	199	1.40E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.201
SRR1783600	control	7.365
SRR1783602	moderate drought stress	11.094
SRR1811619	moderate drought stress	10.530

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.418
DRR006520	Root Summer glycyrrhizin high producing strain	14.168
DRR006521	Root Winter glycyrrhizin high producing strain	3.791
DRR006522	Root Winter glycyrrhizin high producing strain	3.779
DRR006523	Root Summer glycyrrhizin low producing strain	6.051
DRR006524	Root Summer glycyrrhizin low producing strain	6.667
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.711
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.838

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.626
SRR2868004	Drought Stress (root)	18.335
SRR2967015	Control (root)	11.504

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.923
SRR9715740	Leaf	15.164
SRR9715741	Leaf	12.348
SRR9715739	Root	6.162
SRR9715742	Root	9.115
SRR9715743	Root	9.367

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.368
SRR8749028	MeJA induced 9h	1.627
SRR8749029	MeJA induced 9h	3.014
SRR8749030	Uninduced	0.649
SRR8749031	Uninduced	0.341
SRR8749032	Uninduced	0.700

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.779
SRR8400027	Control - Root	15.077