Gene detail

Gene detail information of Glyur000306s00014019

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59
NR	KHN27231.1	Transcription initiation factor TFIID subunit 6 [Glycine soja]
Swissprot	tr\|Q9MAU3\|TAF6_ARATH	Transcription initiation factor TFIID subunit 6
trEMBL	tr\|I1JDP3\|I1JDP3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G10220.1}

Sequence

Transcript Sequence

>Glyur000306s00014019.1
AAACGACCCTAATTTAAAATTTCAGATAGTAGCAAGGTAAAAAGCTGTTTACCATCCAGAAATGGCCGTAATTACATGACCCATTCTTCTTCTTCTTCTTCTTCTTCATTCATCCACTTCAAGTCTTCAACAATTACTTCATCACTCTGTTTGCGACTTCGCCTCTCCCCCAGCTCCGTCGCTGCGCGAATCACAGCCCAAAGCATTCAAAAGGTGTGTGCGTGCGTGTGCGTGTACGTGTGAACATGAGCATTGTTCCCAAGGAGACAATCGAGGTTATTGCACAGAGTATTGGGATTAACAACTTGTCCCCTGATGTCGCTCTTGCCGTCGCTCCTGATGTCGAATACCGNATTCGCCAGATTATGCAGGAAGCAATCAAATGCATGCGCCACTCTAGGAGAACCACTTTGACAGCGGATGATGTTGATGCTGCGCTCAACCTGAAGAATGTCGAACCAATATATGGATTTGCATCTGGTGGTCCTCTACGGTTCAAAAGAGCTCTTGGACAAAGAGATTTGTTTTATATTGATGACAAGGATATAGACTTAAAAGATGTCATTGAAGCTTCTTTACCAAAAGCACCCCTCGATACTGCAGTTACATGTCACTGGCTTGCCATTGAAGGTGTGCAACCTGCTATTCCAGAAAATGCTCCTGTTGATGTAATTTCAGCTCCTTCTGATATAAAAAAGAATGAACAGAAGGATGATAACCTTCCAGTTGACATCAAATTACCTGTTAAGCACGTATTATCTAAAGAGCTTCAGCTGTATTTTGATAAAGTGGCTGAGCTAACTCTGAATGAGTCTGATTCGGTCCTCTTTAAAGAAGCATTAGTAAGTTTGGCTACTGATTCAGGACTTCATCCATTAGTTCCTTATTTCACATGCTTTATCGCTGACGAGGTTTCTCATGGTTTGAATAATTTTCCTCTTCTATTTGCCTTGATGCGAGTTGTTAATAGCCTTCTGAAAAACCCTCATATCCATATCGAACCTTATCTACACCAGTTGATGCCATCAATTGTGACCTGCCTTGTTGCTAAAAGGTTGGGCAGTAGATTGGCAGACAACCATTGGGGACTTAGAGACTTCACAGCTAACCTGGTTGCCTCAATATGCAAAAGGTTTGGGCATGTTTATAGCAATCTACAGTCCCGGTTAACAAAAACATTGCAGAATGCATTCTTGGATCCCAAGAAGGCAATGACACAACACTATGGTGCGATTCAGGGGTTAGGAGCACTGGGACCCAATGTGGTTCGCCTTCTTTTGCTGCCAAATCTTGAAACATATATGCGACTTCTTGAACCAGAGATGCTTCTTGAGAAGCAGAANAATGAAATGAAAAGGCATGAAGCTTGGCGTGTTTATGGAGCCTTGCTGCGTGCTGCAGGTCAATGTATATATGATCGACTAAAGATATTTCCAGCTTTTCCATCTCCTCTCCCTCATGCTGTCTGGAAGACCAATGCAAGAGTTCTTACTTCTCCAACTCATAAACGCAAGGCAAGCCCTGGGCAATTGGANCAGCAACCCCCATTGAAGAAAACTGCTACTGATGGTGATGTTAGTGTGGTTCTGGCAAATTCCTCACCCTCTCATAAGCAAGGGGAGGCAGGGACTCAAGCTTCTTCAGTTGATTCGATAATTGGTTCATCGTCATCTTCTGGACAAATGAAAAATGAGATCAGTTTAGATGGCGAAGTTATAAGTAACAGGGGTGATACTCGGGCATTGAAGACATCTGCTGCCCTAGCCCAGGTTTGGAAGGATGAGCTGAATTCAGGACGTATCCTGGTGTCACTGTTTGAGTTGTTTGGGGAAGACATCATTTCCTTCATTCCGGCTCCTGAGATGTATATGTTCTTGTAACTTGGGGAGTATTATGCTNTTTTCAGGATGCTGTCTTCTTCCAAGACCATCTGAACTGGCAAGAAACCCATTCCATCTGCCATGGCAAGCATCATCTGCTTGGTTTCCCTCTTGAATTCTTCCAGATCAACTGTGCCATTCAAGTTGTGGTCGAATTGTATGAACAAGGATTCATAAACACGAGCAAGCTCATCTGGGTCAGGCTCCACATCAATACCAAAGTGGGTCTCCAAAACCCTCAGGCTTCGAAGCTCCTTCAACATCTCTTCATAGGAGAGAAGACCATCATGATTTGTGTCAAGGTGAGCAAACCGGATATTTANCGAGTTATTAAATGCTTCTTCATCGTCAAGGAAGTTGACAATGGTGTCACCATCCAAAATTTCTACACTCATTTTTCACTTCTACTTGATATCAAATGGAAGGTAGTTTGAATGGACTAAAAGGAGAGCTATTTGTTTGCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00306	137761	144839	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0051090 regulation of sequence-specific DNA binding transcription factor activity

cellular_component
GO:0005634 nucleus

molecular_function

GO:0005488 binding

GO:0046982 protein heterodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000306s00014019.1	PF02969.12	TAF	1	65	1.40E-29
Glyur000306s00014019.1	PF07571.8	DUF1546	262	352	5.80E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.230
SRR1783600	control	13.968
SRR1783602	moderate drought stress	12.876
SRR1811619	moderate drought stress	13.023

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.004
DRR006520	Root Summer glycyrrhizin high producing strain	15.036
DRR006521	Root Winter glycyrrhizin high producing strain	12.642
DRR006522	Root Winter glycyrrhizin high producing strain	12.541
DRR006523	Root Summer glycyrrhizin low producing strain	17.719
DRR006524	Root Summer glycyrrhizin low producing strain	17.217
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.761

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.530
SRR2868004	Drought Stress (root)	16.163
SRR2967015	Control (root)	15.506

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.878
SRR9715740	Leaf	11.748
SRR9715741	Leaf	10.480
SRR9715739	Root	7.169
SRR9715742	Root	12.388
SRR9715743	Root	11.043

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	67.869
SRR8749028	MeJA induced 9h	70.247
SRR8749029	MeJA induced 9h	337.566
SRR8749030	Uninduced	15.524
SRR8749031	Uninduced	164.148
SRR8749032	Uninduced	282.278

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.992
SRR8400027	Control - Root	17.258