Gene detail

Gene detail information of Glyur000306s00014016.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55370.2	3.00E-28	OBF-binding protein 3
NR	XP_004492130.1	1.42E-98	PREDICTED: dof zinc finger protein DOF5.1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9M2U1\|DOF36_ARATH	2.00E-37	Dof zinc finger protein DOF3.6
trEMBL	tr\|K7K7B3\|K7K7B3_SOYBN	6.00E-92	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G10250.2}

Sequence

Transcript Sequence

>Glyur000306s00014016.1
ATCTTTTTTCCATCTCCATTGTGTGATCATCTCTTTTTCTCTTCTGCAACTCTCTCATGTTGATGTGATTCTCCACCCACAACCACACACACACACCTCCAAACATCATCAAAACTTTTGCAAAAGAGAGAAAGCACTCTATCTATCTCTAGCTAGCTAGTTAATTACAAGAGAAAGAGGAGGCCAGGAGCCATGGTCTTCCCGTCCCTCCCAATCTATTTAGATCCACCCAACTGGTCACAACAGCAAGCTAGTGAGCAACAAGGAGGAATTGAAATCCAAAATAATATTCCAAGGGGAAGTAGAAGTACAGTTATTAATGAAGGTGGTGGTGGCTACCAAGGGTCTATGATAAGAGCAGGGTCATCATCATCAATGGGTGAGACTCAGAGAGCTAGGTTGGCTAAGATACAGCAACAAGCAGGACCAGGTGATGCAGGTGCAGTACTGAAGTGTCCACGGTGTGAGTCGACAAACACAAAGTTCTGTTACTACAACAACTACAGCCTGTCACAGCCCCGTCACTTTTGCAAGACATGCCGTCGGTATTGGACCAGAGGNGGTGCACTCAGGAATGTCCCCGTTGGTGGTGGCTGTAGAAGGAACAAAAGATCCTCCTCAACCACCAAATCTCGTCCTCTCAAATTACCTGCTGCAGGTGGTTCCAGCTCAGCAAGTGCAAATTCTTCTTCTTCTAATGGCTGCATCNCTACTATTAATAATANTTCTGATGTGAACAATAATGTGTTGATGGGTGGTGGTCATTTGCCAACTACTCATCAGTTTCCATTCTTGACCTCCTCTTTGCAACATCACCATTACTACTATAACAACAATGGTGACTTTGGATCTCGTTTTGGGGCAACAAACCCAACATCATCTTTGGTGGCCAAAAATATTGGCAATGGTAGTGCTCATGAGTTTCAAATTGGTGCTGCTGGTTCTTCTTCAAATGGTGGTTCTTTGTGCCTTGGTGAGCAATGGAGGTTGTTGCATAATTTGCAACAAGTTCATCATCANCAGCAGCAGCAGAATCAACAAGTACAGTTCCCTTTCTTGACTAATTTGGAACCACAAATTGGGTTGTTTCAGTTTGGTAGTAGTGGAGGTNATAATAATAGTAATATTATTCGTTCTAAGGCGGTGGATTCTACTAGTGTTAGTACGGGAATATTAATGCCTCATCAGCTTAACACAATCAAGATGGAAGCAAATAATGGTCAAGGTCAAGGGTTGAGTAGTTTGCCAAAGAATCTCTTGAGTGGTTCGGGAAGTAGTAATAATAGTGATCTATTTTGGAATGGAAGTGATGGCAATAATATTATTAATGCATGGAGTGAAGTTCCNAGTTTTACTCCTTCACCCAGCCACTTGTTGTGATCGATCCTCACAATGAAGCTAGTACTTTTGGTTCTCTAATAGCCACAGCTGATCACTTATATATAGAAATGATCCAAGGTTTAATTAAGGAGTACTTAGAACCTTTCAGTTGCTAACCATGGATGGAAGTCCATTTCCACCACTTATATGTGTGTTAAGAGGGAAGGGAAGATCATGAAAGGGAAATTAAGGAATGATCGATCAGAACATTTTGTATTACCTCAATGGTATACGCAGCATTAACATGTTGAGAGAAGTATTAATGGGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00306	124327	126276	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000306s00014016.1	PF02701.10	zf-Dof	85	143	1.30E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.505
SRR1783600	control	1.503
SRR1783602	moderate drought stress	0.829
SRR1811619	moderate drought stress	0.808

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.248
DRR006520	Root Summer glycyrrhizin high producing strain	1.234
DRR006521	Root Winter glycyrrhizin high producing strain	0.676
DRR006522	Root Winter glycyrrhizin high producing strain	0.653
DRR006523	Root Summer glycyrrhizin low producing strain	0.859
DRR006524	Root Summer glycyrrhizin low producing strain	0.914
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.585
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.739

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.757
SRR2868004	Drought Stress (root)	2.499
SRR2967015	Control (root)	2.139

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.934
SRR9715740	Leaf	1.739
SRR9715741	Leaf	1.572
SRR9715739	Root	0.438
SRR9715742	Root	1.950
SRR9715743	Root	2.569

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.129
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.582
SRR8400027	Control - Root	3.226