Gene detail information of Glyur000306s00014013 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39550.1 | 2.00E-132 | Prenyltransferase family protein |
| NR | XP_004492125.1 | 0 | PREDICTED: geranylgeranyl transferase type-1 subunit beta-like isoform X1 [Cicer arietinum] |
| COG | YP_004903591.1 | 1.00E-06 | hypothetical protein KSE_18100 [Kitasatospora setae KM-6054] |
| Swissprot | tr|O80642|PGTB1_ARATH | 9.00E-166 | Geranylgeranyl transferase type-1 subunit beta |
| trEMBL | tr|I1JDP8|I1JDP8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G10280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00306 | 103330 | 108951 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000306s00014013.1 | PF00432.16 | Prenyltrans | 183 | 226 | 6.50E-16 |
| Glyur000306s00014013.1 | PF00432.16 | Prenyltrans | 242 | 285 | 4.30E-12 |
| Glyur000306s00014013.1 | PF00432.16 | Prenyltrans | 294 | 332 | 4.00E-08 |
| Glyur000306s00014013.2 | PF00432.16 | Prenyltrans | 181 | 209 | 2.90E-08 |
| Glyur000306s00014013.2 | PF00432.16 | Prenyltrans | 225 | 268 | 4.00E-12 |
| Glyur000306s00014013.2 | PF00432.16 | Prenyltrans | 277 | 315 | 3.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.882 |
| SRR1783600 | control | 7.898 |
| SRR1783602 | moderate drought stress | 6.983 |
| SRR1811619 | moderate drought stress | 7.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.709 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.502 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.545 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.168 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.789 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.434 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.150 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.272 |
| SRR2868004 | Drought Stress (root) | 20.881 |
| SRR2967015 | Control (root) | 22.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.397 |
| SRR9715740 | Leaf | 5.472 |
| SRR9715741 | Leaf | 7.966 |
| SRR9715739 | Root | 6.912 |
| SRR9715742 | Root | 6.316 |
| SRR9715743 | Root | 6.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.171 |
| SRR8749028 | MeJA induced 9h | 8.367 |
| SRR8749029 | MeJA induced 9h | 19.392 |
| SRR8749030 | Uninduced | 6.711 |
| SRR8749031 | Uninduced | 9.301 |
| SRR8749032 | Uninduced | 9.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.612 |
| SRR8400027 | Control - Root | 21.496 |