Gene detail

Gene detail information of Glyur000306s00014004

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02530.2	2.00E-39	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_003518653.1	1.90E-96	PREDICTED: aly/REF export factor 2-like [Glycine max]
COG	YP_002015909.1	7.00E-07	RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
Swissprot	tr\|Q8L719\|THO4B_ARATH	3.00E-46	THO complex subunit 4B
trEMBL	tr\|I1JDQ5\|I1JDQ5_SOYBN	7.00E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G10380.1}

Sequence

Transcript Sequence

>Glyur000306s00014004.1
CACCCACTCACTCACTCCTCTCACTCTGTGCTACACTCACTACTACAATCTCTCTCTCTCTCTCTCTCACAAACCCTACGCTCCCATTTTCCGACGACAATGGCCGACCGCATTCACATGTCTCTCGACGACATTATCAAGAGGTCCTCCGCCAATCTCCCTCCCCGCCGACACTCCGTTCACGGTCCCGACCGCCGCTTCTCCCTCCGTAGCCCCGTCAGAACGACGCCGTACTCCATCCCTCAGGCAAGACAACAAGTGTGGCGAAGAAGCATCTTTCCTGAAACGACCGCCGCTGCGCCTGACATCACTCGCACCAAACTCTACATCTCTAACCTCGACTATGGGGTTTCCAACCAAGATATTAAGCTGCTGTTCTCGGAAGAGGGTGAGCTGGAAAGATATGCCGTCCATTATGACAAGAGTGGGAGATCAAAAGGAACAGCTGAAGTTGTCTTTATGAGGCACTCTGATGCTTTAGCAGCCGTCAAGAAATACAACAATATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTTGTGGGAACAAGTTTGGTTACTCCTGCTGTTATGCCTCCTTATCAAAAAGGCTTACTGGGAAGGCCACCAAATGGTGTCTTTGTAAGCGATGGAGGTAGCAGGTTCCACAATAGCTTTACGCGAGGCCATCTTCCAAGGGGCCGTGGAGAAGAGAAGAACCATATTCCAAGGGTACCTTTTAGAGATCTTTATCATGACTTGGAGAGGTATAACCGCTGTCCAAGAGGCCGCATAGAAGGGAGAGGCCATATTCGAAAGGTGTCTGCTAAAGATCTTGATGAAGACTTGGAGAGGTATCGCTTGGAGGCTATGAAGATAAATAAAGAAAATTGAAAGGGAAATCATGATTGATAGCTAGAGTGACTCCTATTATGAGTAAATAGGTCAGGAAAGCATTGGGTATAGGATTAATGGTAACATGTCTGGGGTTCTGTTTTGCATGATTTTACTTCTACTGTATATAATAGTTTGCCATTTTACTTTCAAGTTTCAACAGATTTAGTTACCTCACTGGTTTAAGCCCCTATCAATTAAGCATTCTTTTGCAAGCTACAAAGCCAATATCTTCCCTGCTTTTTGTTTGTTTCGGATGGTTTGATGAACATATAGAAAGACCCATTGTTTTCTTTTACACTAGAAAATCAAAAGTTCCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00306	58245	60786	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000306s00014004.1	PF00076.17	RRM_1	75	143	3.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.581
SRR1783600	control	2.630
SRR1783602	moderate drought stress	5.000
SRR1811619	moderate drought stress	4.889

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.306
DRR006520	Root Summer glycyrrhizin high producing strain	12.294
DRR006521	Root Winter glycyrrhizin high producing strain	0.279
DRR006522	Root Winter glycyrrhizin high producing strain	0.275
DRR006523	Root Summer glycyrrhizin low producing strain	13.218
DRR006524	Root Summer glycyrrhizin low producing strain	13.385
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.954
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.074

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.799
SRR2868004	Drought Stress (root)	4.555
SRR2967015	Control (root)	5.374

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.248
SRR9715740	Leaf	1.119
SRR9715741	Leaf	0.376
SRR9715739	Root	3.382
SRR9715742	Root	1.578
SRR9715743	Root	2.008

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	80.597
SRR8749028	MeJA induced 9h	4.579
SRR8749029	MeJA induced 9h	20.647
SRR8749030	Uninduced	0.266
SRR8749031	Uninduced	0.385
SRR8749032	Uninduced	2.007

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.651
SRR8400027	Control - Root	3.520