Gene detail

Gene detail information of Glyur000306s00014000

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04600.1	7.00E-69	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_006574462.1	1.72E-123	PREDICTED: uncharacterized protein LOC100814276 isoform X1 [Glycine max]
COG	YP_007985049.1	5.00E-08	putative RNA-binding protein rbpA [Candidatus Saccharimonas aalborgensis]
trEMBL	tr\|I1JG14\|I1JG14_SOYBN	6.00E-124	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G29190.1}

Sequence

Transcript Sequence

>Glyur000306s00014000.1
GTGATTACCTCTAGGGTTTCTTTCCTCTTTCCACTCCATTTTCTCGCCGTTCCCTCTTACTCTCTGCTCCCTCACTCCCACCGTTTCTCCATTCTCTCGCNGGTGGCATCTTGTAACGTGCTAAAGGTGAGATGGGGGCCAAGGCAAAGAAAGCCATGAAGAAGAATCTGAAAAGTGCTACTGCTAATAAGCCTTCCGAGGGNGCTGATTTTTTGCCGTTGGAAGGTGGTCCTGGTCGAAAACTTCCCGAACAGAAACCGCTGGAGAATACTGCAACCGTTTTGTATATTGGTCGGATTCCACATGGCTTCTATGAGGACGAGATGAAAGGTGCTCGTCTTATTGCAGCTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGAATTGCTAGAAATAAAAAGACCGGAAAATCNAGACATTTTGGTTACATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTAGCCGATACTATGCACAATTATTTGCTTTTTGAACACCTTCTTCAGGTTTATGTGATACCTCCAGAGCATGTTCACCCGAAATTATGGAGAGGATTCAATTACCGTCACAAGCCAGTGGACTCTGTCCAAATTCAACGAGAGCGACATGAAAAGGAAAGAACATTGGGAGAGCACAAGAAAATGGTGGAAAAGATTATGAAACGTGACAAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGTCCTGAGATTGTGGGTAACGTCCAGCCTGCTCCAAAGAAGATAAAGTTTGAAGACTGAGTGGGTAAACATGTTTCCTCTCTTCAAAAGGATGACCATTCACCTCACAGCATAAGGAGTGGAAGGCTGATGGTCTACCGTGTCATGAGGGATAACAAGAAACACCGTTGTTTTAGGATTTTAAAAAATAGTAATGAACTGTCATCTTTGTAAGGGCAAGCGCCTCCAATTTTTTAGACTTCCATATATTCATTGGTTTTTGTTGAAGTTAATCACCTTCATTGTGTCGAGTTAAAAAAAATGAATTACCAATATATCTGCCTGAATCATAGATTGTTAGCAAGTGGACGATGATTACTGGTTTATTGGAATTGGATACTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00306	36871	39316	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000306s00014000.1	PF00076.17	RRM_1	71	123	5.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.351
SRR1783600	control	60.763
SRR1783602	moderate drought stress	53.424
SRR1811619	moderate drought stress	53.360

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	188.939
DRR006520	Root Summer glycyrrhizin high producing strain	187.342
DRR006521	Root Winter glycyrrhizin high producing strain	207.869
DRR006522	Root Winter glycyrrhizin high producing strain	199.594
DRR006523	Root Summer glycyrrhizin low producing strain	96.762
DRR006524	Root Summer glycyrrhizin low producing strain	95.291
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.046
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.163

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	87.309
SRR2868004	Drought Stress (root)	72.640
SRR2967015	Control (root)	75.291

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.817
SRR9715740	Leaf	50.868
SRR9715741	Leaf	63.692
SRR9715739	Root	20.504
SRR9715742	Root	60.956
SRR9715743	Root	56.336

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	684.469
SRR8749028	MeJA induced 9h	76.830
SRR8749029	MeJA induced 9h	453.632
SRR8749030	Uninduced	49.306
SRR8749031	Uninduced	119.375
SRR8749032	Uninduced	135.092

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	78.006
SRR8400027	Control - Root	73.733