Gene detail information of Glyur000305s00025117 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32640.2 | 2.00E-54 | Lycopene beta/epsilon cyclase protein |
| NR | XP_004491132.1 | 2.20E-111 | PREDICTED: uncharacterized protein LOC101498012 [Cicer arietinum] |
| COG | YP_720423.1 | 6.00E-37 | FAD dependent oxidoreductase [Trichodesmium erythraeum IMS101] |
| trEMBL | tr|A0A072TS21|A0A072TS21_MEDTR | 3.00E-110 | Lycopene beta/epsilon cyclase {ECO:0000313|EMBL:KEH19653.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00305 | 137165 | 139935 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.064 |
| SRR1783600 | control | 0.230 |
| SRR1783602 | moderate drought stress | 0.234 |
| SRR1811619 | moderate drought stress | 0.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.444 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.505 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.385 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.307 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.224 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.015 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.852 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.267 |
| SRR2868004 | Drought Stress (root) | 3.129 |
| SRR2967015 | Control (root) | 2.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.161 |
| SRR9715740 | Leaf | 19.464 |
| SRR9715741 | Leaf | 9.681 |
| SRR9715739 | Root | 0.169 |
| SRR9715742 | Root | 0.451 |
| SRR9715743 | Root | 0.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.640 |
| SRR8749028 | MeJA induced 9h | 1.906 |
| SRR8749029 | MeJA induced 9h | 0.383 |
| SRR8749030 | Uninduced | 0.212 |
| SRR8749031 | Uninduced | 0.220 |
| SRR8749032 | Uninduced | 0.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.844 |
| SRR8400027 | Control - Root | 1.158 |