Gene detail

Gene detail information of Glyur000305s00025109

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33120.1	4.00E-96	synaptobrevin-related protein 1
NR	XP_010109710.1	8.49E-136	Putative vesicle-associated membrane protein 726 [Morus notabilis]
Swissprot	tr\|P47192\|VA722_ARATH	9.00E-125	Vesicle-associated membrane protein 722
trEMBL	tr\|W9S386\|W9S386_9ROSA	3.00E-136	Putative vesicle-associated membrane protein 726 {ECO:0000313\|EMBL:EXC24180.1}

Sequence

Transcript Sequence

>Glyur000305s00025109.1
AATAATCTATTTTTTCTTTCTCTATTCATATTTCATCTTCTCTGTTCNGCGAGTAGCAGCAGCAACAACACCTTCACCCTTTTCATTTTGATTCGTTTGAGTATAGTTGAGATGGTGGGGAAGCAGCAATCGTTGATCTACAGCTTCGTGGCGCGAGGGACGTTGATCCTTGCGGAACACACTGACTTCACCGGAAACTTCACCACCGTAGCCTCTGACTGCCTCCAAAAGCTACCTCTCTCNAACAACAACAAGTTCACTTACAACTGCGACGGCCACACCTTTAACTACCTCGTCCACAATGGATTCACTTACTGTGTAGTGGCAGTGGAGTCTGTTGGTCGACACATTCCAATGGCATTTCTTGAACGTATTAAGGAAGATTTCACTAAAAGATATGGTGGAGGAAGAGCTACAACAGCATCTTCTAAAAGCCTTAACAAAGAATTTGGACCAAAGTTGAGGGAGCATATGCAGTATTGTGTGGAACATCCAGAGGAGGTGAGCAANCTTGCAAAAGTGAAAGCTCAGGTTTCTGAAGTCAAAGAAGTTATGATGGAAAATATTGAGAAGGTTATAGATCGGGGAGAGAAGATTGAGGTTTTGGTGGATAAAACTGAGAACCTTCGCTCTCAGGCACAAGATTTCAGGCAGCAGGGAACCCAGTTGAGGAGAAAGATGTGGTATCAGAACATGAAGATCAAGCTGATAGTTCTTAGTATCATCATTGCCTTGATCCTCATTATTGTTCTTTCTGTGTGCAACGGCTTCAATTGTGGAGGATGATGACTAGTCGTCTTCTCACTTATCTGTATTTGTCACTACATGGGATTGTTTTGTTGCGTATGTCTACTCTCTCCAGACCTTACATGATGGAAGTCTCATGCACTATGCCGCCGCTCTTTTATAGGATTGTTTTGTAGCATAATATATATTTGCATAAAATGAGCATTAAGATTTGTTTATTGGACATTACATGGCTTCATGTTAAAAAAAAATGGAAAGACGGAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00305	87885	92564	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000305s00025109.1	PF13774.1	Longin	33	114	1.60E-22
Glyur000305s00025109.1	PF00957.16	Synaptobrevin	132	218	5.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.169
SRR1783600	control	0.865
SRR1783602	moderate drought stress	1.052
SRR1811619	moderate drought stress	0.889

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.406
DRR006520	Root Summer glycyrrhizin high producing strain	0.528
DRR006521	Root Winter glycyrrhizin high producing strain	3.525
DRR006522	Root Winter glycyrrhizin high producing strain	3.246
DRR006523	Root Summer glycyrrhizin low producing strain	1.984
DRR006524	Root Summer glycyrrhizin low producing strain	2.912
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.184
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.309

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.077
SRR2868004	Drought Stress (root)	23.053
SRR2967015	Control (root)	12.708

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.761
SRR9715740	Leaf	2.146
SRR9715741	Leaf	10.299
SRR9715739	Root	1.604
SRR9715742	Root	1.028
SRR9715743	Root	1.184

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.745
SRR8749028	MeJA induced 9h	32.105
SRR8749029	MeJA induced 9h	39.778
SRR8749030	Uninduced	103.868
SRR8749031	Uninduced	180.311
SRR8749032	Uninduced	115.433

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.233
SRR8400027	Control - Root	5.809