Gene detail

Gene detail information of Glyur000304s00027639

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G42170.1	2.00E-162	BED zinc finger ;hAT family dimerisation domain
NR	KHN03605.1	0	Putative AC transposase [Glycine soja]
Swissprot	tr\|Q9M2N5\|DSLE_ARATH	0	Zinc finger BED domain-containing protein DAYSLEEPER
trEMBL	tr\|K7M039\|K7M039_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G22881.1}

Sequence

Transcript Sequence

>Glyur000304s00027639.1
ATGGACCTCAAGAGTCCAATACGAAATCCAAAAAAAAAACTTTTCAGAAGAAACCTTATCTCGTTGACCAAAAAAAAAAAGAAGAAACCTTATCTCTACTACGAACCCTGGTACCATATACCAACAACCAACCAACCCTTGTTGAACTCAAAAGTCCAATTAGCTTCTCTCTGCAAAACCCTCGATCTCAGGCCCAATCTCCATCTCCCTCTGGTAAGCCCTTTCCCTCTCTGCAAAACCCTAGATCTCACTCCGGTCACCCCTGAGGCCCGGTTTCCGATTCGGATCCGCGTTTTCCACCGCCAGATTCTGTTTACATATATATACCCGGGTGTTGGCAGATGGTCATGTAATTTTGAAGCAATTTTGTCACAGGGATGGTACTGTAGTGGGGAAGATTCATATCAAAACAAGATGGTTACTGTTGAGGAAGACAAAGTGGTTGTGACNCCTGAGGTGAAAAGTGCGCCAGTCAGTGCTGATTTTCAACCTAGCAACNATCTGGCAAATTCTGAAAATCTGTCTGACAGTAATGTGGAAAATTCNGAGCCTCAGCCAAACAAGGATCTNTCCAATTCCAAAGCGGAGCCTGACAAAGGACTTCCTACATCTGAATTACAGGCTTCTGGTGGTGATGCAAGTGCAGGTCCACCCAACCATGAGTTGGACAACACCAAAGAACCTCCTAACAAGGAGCCAGAGAATTCTGAATCAATACCCAATGACCAGTTGAACAATGCTAANGCCCCAAACGACAATCAGCCAGTGGACTCCAAGGCACCACTCAACAATCCATCAGTCAACTCTGAAACACCCGACGACAATCAGCCTGTTAATTCNGATTCTACTCTTGACAAGAAGCCTGATTCTGAGGCACCAAACCAGCCGGTCAATTCTGAGGCACTTCCAAAAAATGGTGTGGTTAATTCTGAATTACAGACTAGTAATGATGTGGTTGTATCTGAAACACAGTACAGCAATGAGGTGGCTTTATCTGAAACACAGCAAAGTAATGAGGTGATTATGTCTGAAACACAGCCAAGCAATGAGGTGGTCATGTCTGAATCANTGCCCAACAACAGTGAGGTAGTCATGTCTGAGACACAGCCCAGCAATGAGACTGTCATGCATGAAGCACAGCCCGGCAATGATGTGGTCATGTCTGAAGCTCTGCCTGAAAATGCATTGGCCACTTCCACACCAGATCACAACAATCAGCTTTCTCATCCAGAAACTCTTTCTCATAATGATCAGTACGCAAATTTCGATATGATTCCTGAAGATCAGCTGCCTCAACCTGAATCGCTGCCCAATTGTGATCCACTGCCCAGTTCTGAACCACTGCAAGACAGTCACCTCCGAGACATCAAACCAATACTGCATAATCATCTGGCCCAGTATGATACAGTTCCCAACAATCATCTGGATCATCCCGAGGCACTGTCCAATCATCAGCTAAATGACTCCGAGACAATGTCCCANGGACAGCTAGCTAATTCCCAAATGTTGCATCACTATGNGCTGGAAAATAGTGAAACACAGCATGAAAATCAGCTAGTCAATTCTCAAACACACTATGAGATCGTTGATGCTAGCACCCTGCCCAGCTATGAGATAGTAAATGCTGAAACTCCACTGAACAGTGAGGAACGTACCCCTGAAACTCAGCCAAACAAGAGGAGGAAAAAGAAGTCTATAGTATGGGAACACTTCACCATAGAAACAGTCAGTGCTGGATGTAGACGAGCATGCTGCAAGCAATGCAAGCAAAGTTTTGCCTACAGTATTGGTTCAAAAGTTGCTGGTACCAGCCACCTTAAACGCCACATTGCCAAGGGGACATGCTCATCTCTTCTGCGTAGTCAAGATCCGAATCAATTGAACTCTTATACCCCACGATCAAGGGGAAGTGGGGCTGGCAATGCTAGCAATGCACCAAAGCGGCGTTATAGATCCCCCAATACTCCTTATATCATTTTTGATCAAGATCGATGCCGCCATGAGATTGCTAGGATGATCATTATGCATGATTACCCCCTTCACATGGTTGAGCATCCAGGATTTGTTGCATTTGTCCAAAATCTGCAGCCCCAGTTCAATATGGTGACCTTTAANGCTGTCCAAGGAGACTGTGTTGGAACGTACTTGATGGAAAAACAAAACATTATGAGATATTTTGACGGATTACCAGGACGTTTTTGTCTGACATTGGACATCTGGGCCTCAAGTCTATCTGTAGGCTATGTGTTTATAACTGGACATTTTGTCGATAGTGATTGGAAGTTGCAGAGGAGAATTCTCAATGTTGTGATGGAACCATACCCTGATTCTGACTCTGCTATCAGCCATGCTTTAGCTGTTTGCCTTTCTGATTGGAATTTGGAGGGCAGGGTGTTTTCTATCACTTGCAATCAGGCACTGAGTGAAGTTGCCCGTGGAAATCTCAGATCGTTACTCTCTGTAAAAAACCCACTTATCCTCAATGGTCAGTTGCTAATTGGAAATTGCGTTGCCCGTACTCTAAGCAATGTTGCAAATGATTTGTTGAGCTCTGTACAAGGCATAGTGAAAAAAATCCGGGATAGTGTGAAATATGTGAAGACTTCAGAATCACAAGAGGAAAAATTCCTGGAGCTCAAGCAGCAACTTCAGGTCCCCAGTGAAAGGAGCCTTTTTATNGATGATCAAACCCAATGGAATACAACATACCAAATGCTGGTGGCAGCTTCTGAGCTAAAGGAAGTGTTTTCTTGTTTGGACACTTCCGATCCTGATTACAAGGGAGCCCCATCTATGCAAGAATGGAAGCTTGTTGAGACCCTCTGCACTTATTTGAAGCCTCTTTTTGATGCAGCAAACATTCTTACCACAGCAACACATCCCACTGCCGATGGAGTTCATGAGCTGTTTCATGAGTANGTGGCACTTCCCCTGCCACTGACACCGGCTTATACAGAAGATGGAAATGCTGGAAGCCAAGGGAAGATGGAGGGATCCCCTGTGGTTGCTGTTTCATGTTACACAGCACTCAGTATTCGTCATTTAACTNTTTGA

Protein Sequence

>Glyur000304s00027639.1
MDLKSPIRNPKKKLFRRNLISLTKKKKKKPYLYYEPWYHIPTTNQPLLNSKVQLASLCKTLDLRPNLHLPLVSPFPLCKTLDLTPVTPEARFPIRIRVFHRQILFTYIYPGVGRWSCNFEAILSQGWYCSGEDSYQNKMVTVEEDKVVVTPEVKSAPVSADFQPSNXLANSENLSDSNVENSEPQPNKDLSNSKAEPDKGLPTSELQASGGDASAGPPNHELDNTKEPPNKEPENSESIPNDQLNNAXAPNDNQPVDSKAPLNNPSVNSETPDDNQPVNSDSTLDKKPDSEAPNQPVNSEALPKNGVVNSELQTSNDVVVSETQYSNEVALSETQQSNEVIMSETQPSNEVVMSESXPNNSEVVMSETQPSNETVMHEAQPGNDVVMSEALPENALATSTPDHNNQLSHPETLSHNDQYANFDMIPEDQLPQPESLPNCDPLPSSEPLQDSHLRDIKPILHNHLAQYDTVPNNHLDHPEALSNHQLNDSETMSXGQLANSQMLHHYXLENSETQHENQLVNSQTHYEIVDASTLPSYEIVNAETPLNSEERTPETQPNKRRKKKSIVWEHFTIETVSAGCRRACCKQCKQSFAYSIGSKVAGTSHLKRHIAKGTCSSLLRSQDPNQLNSYTPRSRGSGAGNASNAPKRRYRSPNTPYIIFDQDRCRHEIARMIIMHDYPLHMVEHPGFVAFVQNLQPQFNMVTFXAVQGDCVGTYLMEKQNIMRYFDGLPGRFCLTLDIWASSLSVGYVFITGHFVDSDWKLQRRILNVVMEPYPDSDSAISHALAVCLSDWNLEGRVFSITCNQALSEVARGNLRSLLSVKNPLILNGQLLIGNCVARTLSNVANDLLSSVQGIVKKIRDSVKYVKTSESQEEKFLELKQQLQVPSERSLFXDDQTQWNTTYQMLVAASELKEVFSCLDTSDPDYKGAPSMQEWKLVETLCTYLKPLFDAANILTTATHPTADGVHELFHEXVALPLPLTPAYTEDGNAGSQGKMEGSPVVAVSCYTALSIRHLTX

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00304	64234	88541	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000304s00027639.1	PF02892.10	zf-BED	565	612	1.50E-07
Glyur000304s00027639.2	PF02892.10	zf-BED	544	591	1.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.835
SRR1783600	control	39.766
SRR1783602	moderate drought stress	71.244
SRR1811619	moderate drought stress	70.035

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.698
DRR006520	Root Summer glycyrrhizin high producing strain	28.339
DRR006521	Root Winter glycyrrhizin high producing strain	13.257
DRR006522	Root Winter glycyrrhizin high producing strain	13.765
DRR006523	Root Summer glycyrrhizin low producing strain	38.991
DRR006524	Root Summer glycyrrhizin low producing strain	39.295
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.688
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.733

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.510
SRR2868004	Drought Stress (root)	27.500
SRR2967015	Control (root)	30.924

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.361
SRR9715740	Leaf	12.354
SRR9715741	Leaf	14.579
SRR9715739	Root	8.100
SRR9715742	Root	25.202
SRR9715743	Root	22.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.291
SRR8749028	MeJA induced 9h	71.764
SRR8749029	MeJA induced 9h	24.067
SRR8749030	Uninduced	16.337
SRR8749031	Uninduced	23.458
SRR8749032	Uninduced	15.276

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.369
SRR8400027	Control - Root	21.568