Gene detail information of Glyur000303s00033826 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00150.1 | 3.00E-100 | GRAS family transcription factor |
| NR | XP_007140802.1 | 0 | hypothetical protein PHAVU_008G143400g [Phaseolus vulgaris] |
| Swissprot | tr|O81316|SCL6_ARATH | 6.00E-137 | Scarecrow-like protein 6 |
| trEMBL | tr|V7B4H1|V7B4H1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW12797.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00303 | 189512 | 191830 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
| EAR motif-containing Proteins | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000303s00033826.1 | PF03514.9 | GRAS | 415 | 771 | 7.60E-94 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.064 |
| SRR1783600 | control | 33.381 |
| SRR1783602 | moderate drought stress | 39.451 |
| SRR1811619 | moderate drought stress | 39.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.706 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.577 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.034 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.662 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.848 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.020 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.715 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.378 |
| SRR2868004 | Drought Stress (root) | 32.330 |
| SRR2967015 | Control (root) | 31.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.313 |
| SRR9715740 | Leaf | 32.888 |
| SRR9715741 | Leaf | 30.044 |
| SRR9715739 | Root | 16.128 |
| SRR9715742 | Root | 15.898 |
| SRR9715743 | Root | 14.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.542 |
| SRR8749028 | MeJA induced 9h | 5.568 |
| SRR8749029 | MeJA induced 9h | 3.545 |
| SRR8749030 | Uninduced | 1.946 |
| SRR8749031 | Uninduced | 1.043 |
| SRR8749032 | Uninduced | 1.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.751 |
| SRR8400027 | Control - Root | 25.419 |