Gene detail information of Glyur000303s00033816 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45140.1 | 4.00E-75 | plant VAP homolog 12 |
| NR | AFK39451.1 | 1.61E-139 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9SHC8|VAP12_ARATH | 8.00E-104 | Vesicle-associated protein 1-2, N-terminally processed |
| trEMBL | tr|I3SGQ9|I3SGQ9_MEDTR | 6.00E-140 | Uncharacterized protein {ECO:0000313|EMBL:AFK39451.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00303 | 88868 | 94050 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000303s00033816.1 | PF00635.21 | Motile_Sperm | 7 | 100 | 6.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.682 |
| SRR1783600 | control | 26.317 |
| SRR1783602 | moderate drought stress | 29.031 |
| SRR1811619 | moderate drought stress | 26.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.256 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.547 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 64.732 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 62.025 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 37.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 36.833 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.529 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.534 |
| SRR2868004 | Drought Stress (root) | 48.538 |
| SRR2967015 | Control (root) | 53.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.084 |
| SRR9715740 | Leaf | 24.224 |
| SRR9715741 | Leaf | 23.012 |
| SRR9715739 | Root | 35.154 |
| SRR9715742 | Root | 23.038 |
| SRR9715743 | Root | 28.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.453 |
| SRR8749028 | MeJA induced 9h | 14.304 |
| SRR8749029 | MeJA induced 9h | 22.379 |
| SRR8749030 | Uninduced | 7.180 |
| SRR8749031 | Uninduced | 4.898 |
| SRR8749032 | Uninduced | 11.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 80.396 |
| SRR8400027 | Control - Root | 72.698 |