Gene detail information of Glyur000302s00029249.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23110.1 | 0 | Zinc finger, C3HC4 type (RING finger) family protein |
| NR | XP_004516754.1 | 0 | PREDICTED: uncharacterized protein LOC101513373 [Cicer arietinum] |
| Swissprot | tr|Q9C8E1|ORTH4_ARATH | 2.00E-07 | Putative E3 ubiquitin-protein ligase ORTHRUS 4 |
| trEMBL | tr|A0A072VS29|A0A072VS29_MEDTR | 0 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH40905.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00302 | 135414 | 165589 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000302s00029249.1 | PF13920.1 | zf-C3HC4_3 | 4778 | 4818 | 1.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.522 |
| SRR1783600 | control | 7.559 |
| SRR1783602 | moderate drought stress | 8.805 |
| SRR1811619 | moderate drought stress | 8.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.051 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.080 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.128 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.034 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.359 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.196 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.966 |
| SRR2868004 | Drought Stress (root) | 12.940 |
| SRR2967015 | Control (root) | 11.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.951 |
| SRR9715740 | Leaf | 5.136 |
| SRR9715741 | Leaf | 6.560 |
| SRR9715739 | Root | 1.335 |
| SRR9715742 | Root | 11.553 |
| SRR9715743 | Root | 10.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.770 |
| SRR8749028 | MeJA induced 9h | 4.422 |
| SRR8749029 | MeJA induced 9h | 2.956 |
| SRR8749030 | Uninduced | 5.313 |
| SRR8749031 | Uninduced | 6.499 |
| SRR8749032 | Uninduced | 5.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.732 |
| SRR8400027 | Control - Root | 9.350 |