Gene detail

Gene detail information of Glyur000302s00029247

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66345.1	8.00E-123	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004486552.1	0	PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q3ECH5\|PP107_ARATH	2.00E-148	Pentatricopeptide repeat-containing protein At1g66345, mitochondrial (Precursor)
trEMBL	tr\|A0A072VS24\|A0A072VS24_MEDTR	0	PPR containing plant protein {ECO:0000313\|EMBL:KEH40900.1}

Sequence

Transcript Sequence

>Glyur000302s00029247.1
ATGGGTTCCAATTCCAAACCCCTGAAGCTGTTGAGCAGATTGATCAGTTCCCGCAAATCCCACTCGCAGACGGCGTTTAGGTCAACGTCAAAACAAGACGGTAACATTAACATCGTCAGCGCCATATGNGATTCGTTCAGAAGGGGACGGAACTGGGACGCCGTGAGCTGCGAGTTNGGTTCCGTCGAGTTGAGCGATTCANTAGTGGAGCAGGTTCTGTTGGAGCTTAAGGACCCAATCGACGCAAAAACTGCACTCGGTTTCTTCCACTGGTTCGCAAAAACGCACCGTTTCAAACACGGGGTTCGCTCTTACAGCATAGCCATCCACGTTCTGTTGCGAGCCGGGTTAGTCACCGACGCTAAAGCGTTACTCGAATCCCTCGCAAACAACAACACCGAATCCCCTGCGGTTCGTGCGGTTGTCGATTCCCTCATCGATACCTCTGAGGTTGTTGTCTCCGGTTCTCANGCTCCGGTTCTCGACCTTCTGATACAGGCCTACGCCAAAGCGAGACTAACGNACGTTGCTTTCGACGTTTGCCGTTACGTTGACTCACGCGGGTTCTGCGTGAGCCTCGCGAGTTTCAACGCTCTGCTTCACGTTGCTCAGAAGTCTAATAAGTGTGCCATGGTTTGGGACGTTTACGAGGACATGATTGGGAAGAGGGTTTACCCGAATGCAGTGACTCTGAGGATCATGATNGATGCTCTTTGCAAGGAAGGGTTGTTGCAGAGGAATGTGGACACGTTGGATCGAATCACGAAAAAGCGGTGCTCTCATTCTCCTTCATCGATTGTTAATTCCAGCTTGGTATTGAGATTAATAGAAAAGGGACACGTGGAGGAAGAAGAGCGTGTGGTGGTTGTTGTTACTACATTGTTGAAGAGACTCTTGCAGAAGAACTTGATTCCTGATTTGGTTGCTTACTCTTTGATTATCCATGCTAAAGTTAGTTTGGGGAATTTGGATTCGGCTTTGGAGCTATATAAGGAGATGGTGAGAAGAGGTTTTCAGGAAAATTCTTTTGTTTACACTTCGTTTATAGGAGCGTTTTGCNGGAAGGGGCGAATCGAAGAAGCCGTTGGATTGATGCGCGAAATGGAAGGGAAGGGATTAAAGCCTTATGGTGAGACGTTCGAATGTGTTATCGTTGGGTGCGCGAATTCGGGACGGTTGAAGNAGTGTTTGAGTTTTTTTGAGGAAATGTTGAGTGCTGGATTTGTTCCCAGTTGTGTGTCATTTGATGAGGTGGTGGAGAAGCTCTGTTGTGAGAATGGTTATGTGGAGCGTGCAAATGCTATGTTGACAGTGTTGTTAGATAAAGGGTTTTTGCCTAGTGATGTTGTGTACTCTCATTTGATACGCGGTTATGCCATAAAGGATGAGGTTCAGGAAGTTCTCAAGCTATACTACGAAATGGAGTACAGGTCTATGTGTCCTGGATTGTCTGTTTTCGCATTGATAATTCAGTGTTTGTGCCGTCTTGGGAAGCTGGAAGATGCAGAGAAGTATCTGAGGATAATGAAAGGTCGTTTGCTAACTCCAAATGTGGATATTTATGAGGCATTGATTACCAGTCACGTGCAGAAGGGCAACGGCGTTAGGGCTCTTCAGCTTCGCGATGAAATGGCTTCTTTGGAGTTAACTGAAAACAAGGGTTTCCAAGAAAGTAATATCTATGGAAGCAATAATGCCATGTACTTCTTAGATACACTTAAGACTATATCTTCATCTCTATATATTAAATGGGAACCAAGTCTGCATCCATTTTGGCGGTCAACCTGGAGCCAAAAATGCAAAATGGCGGACTACTTTGGCGGAAAGAAGAAGGCGGGATTTATTGATTGGTCAAAGGNTTTCAAATAGAAGTAGATTTTTCAAAAGCTTTACTGTTTCCACTGACACAAAGTGTGGGTTGCACGTCTCGAAATAAATTAATGTGATTTGAGGTGTATGGGGTACCAAAGGTTTGAAATGGAAACCCAGCAGTAAGAATGGGGTAAATAAAAAAAAAAAAGAACATTTGTTCTTAGCATCACAAGAAGAGGACGAAACCGCAGAAAAGAAGAAGGCAGAAACAGAGGTCGGAGAAGGAGGCATGGGGGAGGAGGAGGAGGCGGCGGCCCCAACGGAGGTCGGAGAAGTCACAGGGGTGGAGAAACGTTGGAGAAGTCAGAGTAGCAGTGGCTCACTGAGATGGTCACGACAAGTTTGACGGTGAAGGTATCAGATGGAAGATCAAGGGCCTGTTTGGTTGGCCTTATTTTCAGCTTATTTGAGCTTCTCTAGTAGTACCATGCTCTTATAGAAGTGTTTGGGTGAATTTTTTGTAAGAGCTTATGGGAGTTTCATAAGTGTTTATAAGAAATTTTCATAAGCTCCATTTCCAAGCTTATGGTTCTAGCTTATGCGGAGCTTATGGCTCCACTAAACCTTAGCAGTGTGAGATCCTGTGCTCGAGTCCTGTCTCGCCCGGTTTTCGTTTCTTTGCGTTTTATTTTTTTTTCACGTGCGATTTCTTCTTTCACTCTTTCCCCTTTCCTCATCATTCCCAAAATCAGAAAACCCTCCCAAATCAGAAACCCTCGTTCCCAATCTCTCTGCACCGAAGACCCTCGTCCCTCGTTCCCAATCTCTGTCCCTCGTTCCCAATCTCTCTGCAAATCAGAAGACCCTCGTTCCCAATCTCTCTGCTCGATTGGTCTTCTCTGCCTCGATTGCAAGCTTCTTCTTCTTCTTCGGATTGCTCTTCTTCTGCTGCGATTAAGCTTCGGCTTCTGCGTTTCGAAGTAAGCTTTCTGCTTCCATTTTTATTACTCTCTCAATCTTCACTCTTCTTGTTCTCTGCGCGTGCTTCCTTACTGTTCTTCTCTGCGTGTGCTTTTTATGGTGTAAATGGGTGTTGATTTGTGGCTGATTTTTGGTTGATTTGTGGTTGTTTATCCTCTTTTATTTTCCAAGGATTTGTGGTTGATTTGTGGTTGTTTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00302	118477	123388	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000302s00029247.1	PF13041.1	PPR_2	195	240	8.10E-08
Glyur000302s00029247.1	PF13041.1	PPR_2	305	353	3.20E-10
Glyur000302s00029247.1	PF01535.15	PPR	379	408	0.0016
Glyur000302s00029247.1	PF01535.15	PPR	449	476	0.0011
Glyur000302s00029247.1	PF01535.15	PPR	488	511	0.0035
Glyur000302s00029247.1	PF01535.15	PPR	521	546	0.51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.295
SRR1783600	control	2.273
SRR1783602	moderate drought stress	4.157
SRR1811619	moderate drought stress	4.157

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.421
DRR006520	Root Summer glycyrrhizin high producing strain	4.346
DRR006521	Root Winter glycyrrhizin high producing strain	5.083
DRR006522	Root Winter glycyrrhizin high producing strain	4.941
DRR006523	Root Summer glycyrrhizin low producing strain	2.394
DRR006524	Root Summer glycyrrhizin low producing strain	2.302
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.187
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.481

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.505
SRR2868004	Drought Stress (root)	12.068
SRR2967015	Control (root)	12.541

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.520
SRR9715740	Leaf	4.681
SRR9715741	Leaf	4.867
SRR9715739	Root	0.513
SRR9715742	Root	3.015
SRR9715743	Root	2.414

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.685
SRR8749028	MeJA induced 9h	5.766
SRR8749029	MeJA induced 9h	1.348
SRR8749030	Uninduced	1.781
SRR8749031	Uninduced	2.173
SRR8749032	Uninduced	0.818

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.409
SRR8400027	Control - Root	8.742