Gene detail information of Glyur000301s00024497 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01680.1 | 1.00E-27 | |
| NR | KHN13158.1 | 7.82E-180 | hypothetical protein glysoja_040438 [Glycine soja] |
| trEMBL | tr|E2FKI9|E2FKI9_SOYBN | 4.00E-180 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G34670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00301 | 170248 | 174065 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000301s00024497.1 | PF14576.1 | SEO_N | 24 | 301 | 1.20E-101 |
| Glyur000301s00024497.1 | PF14577.1 | SEO_C | 325 | 443 | 2.30E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.078 |
| SRR1783600 | control | 0.102 |
| SRR1783602 | moderate drought stress | 0.202 |
| SRR1811619 | moderate drought stress | 0.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.381 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.206 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.077 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.076 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.010 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 320.623 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 321.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.122 |
| SRR2868004 | Drought Stress (root) | 0.035 |
| SRR2967015 | Control (root) | 0.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 865.564 |
| SRR9715740 | Leaf | 452.093 |
| SRR9715741 | Leaf | 354.750 |
| SRR9715739 | Root | 0.175 |
| SRR9715742 | Root | 3.966 |
| SRR9715743 | Root | 3.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.054 |
| SRR8749032 | Uninduced | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.096 |
| SRR8400027 | Control - Root | 0.992 |