Gene detail

Gene detail information of Glyur000301s00024490.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39840.1	2.00E-139	type one serine/threonine protein phosphatase 4
NR	AES61004.2	0	serine/threonine-protein phosphatase PP1 [Medicago truncatula]
COG	YP_008797523.1	8.00E-33	protein phosphatase [Candidatus Caldiarchaeum subterraneum]
Swissprot	tr\|P48489\|PP1_ORYSJ	1.00E-177	Serine/threonine-protein phosphatase PP1
trEMBL	tr\|G7I3V0\|G7I3V0_MEDTR	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}

Sequence

Transcript Sequence

>Glyur000301s00024490.1
TATTACTGTATTTTCCAAGTGTGATCATTGCCAACCACCAACCCACACCGTTTCGTTGTCCTTTAGCACAAGCTCTTGACTTTTGAAAAACCTCAGAGGAACTAGAATGGAACGTGGGGTTCTCGATGGTATCATCAATAGGTTGCTTGATGTCAGAGGCAGACCCGGGAAGCAGGTGCAGCTTTCTGAGGCAGAGATCAAGCAGCTCTGTCTTGTCTCCAAGGATATCTTCTTGAAACAGCCCAACCTCTTGGAACTCGAAGCACCAATTAAGATCTGTGGAGATGTCCATGGCCAATATTCCGACCTTCTGAGACTTTTTGAGTATGGTGGATTTCCTCCTCGTTCCAATTACTTGTTTCTAGGAGACTATGTTGATCGTGGAAAGCAGAGTTTGGAAACAATTTGTCTTCTTCTGGCATACAAAATAAAATATCCCCAAAACTTCTTCCTTCTGAGGGGCAACCATGAATGTGCTTCCATAAACCGTATCTATGGATTCTATGATGAATGCAAGAGGAGATTCAACGTCAGGCTCTGGAAGGTGTTCACGGATTGTTTCAACTGCTTGCCTGTGGCAGCACTAGTTGATGAAAAGATACTCTGCATGCATGGTGGACTCTCTCCTGAACTCCACAATTTGAACCAGATAAGGAGTTTGTCACGTCCCTGTGAGGTTCCTGAAACCGGTCTGTTATGTGATCTCCTCTGGTCTGATCCCAGTAGTGACATTCAGGGTTGGGGAGAAAATGAACGTGGAGTTTCCTATACTTTTGGTGCTGACAGGGTTGTGGAAGATGGATATGAATTCTTTGCTAATAGACAGCTTGTAACAATCTTTTCGGCACCTAATTACTGTGGAGAGTTTGACAATGCCGGTGCTATGATGACTGTTAATGAGACGCTTGTGTGCTCTTTCCAAGTATTGAAGCCTATAGATAAAAGGCTTAAGTTTAGCTTTGGGAGCACAACTACAGTTAAGCCTGGTACTCCAACAAAACTCAAGCAAGCATTTCTTGGTGCTAAAGCATGACTTTGTGGACGTGACTTTGATCAGCAATGTTTGGTACATAGCCAAAGTTTGAGTTGGAACTTGGAAGAAGTTTGTTATCCGTGTTCACTTCAATGTGAAGGAAGAATACAACTACCGACGTAACACAGGATCAGCCTGTGTTTTTACCATTCAGGGACAGCTAAATGTTTCTTTCTTCTGCTGGCACAGTTGCACCTTGTTGTACAATATTGTCAAACACAAATGGAGGACTGAGGTGTCACTTTTCTTCTCTCTCAGTTCTCTTATTATTATTATTATTATTATCATGGTCTATGCCCATCTCACTTTGTATTATAAAATGAATGAATGAATGAATGAATGAATGAATGAATTAATGCAAACGTCATTTGGATGTTAGCGAGTACTGATGAGGGCCGTTAGAGCTGGACCGGTGTCTCTGATTGGGTTTTAGCCCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00301	121269	124586	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06269	PPP1C	EC:3.1.3.16	mRNA surveillance pathway	map03015
			Hippo signaling pathway	map04390
			cAMP signaling pathway	map04024
			cGMP - PKG signaling pathway	map04022
			Meiosis - yeast	map04113
			Oocyte meiosis	map04114
			Focal adhesion	map04510
			Regulation of actin cytoskeleton	map04810
			Platelet activation	map04611
			Insulin signaling pathway	map04910
			Oxytocin signaling pathway	map04921
			Adrenergic signaling in cardiomyocytes	map04261
			Vascular smooth muscle contraction	map04270
			Dopaminergic synapse	map04728
			Long-term potentiation	map04720
			Inflammatory mediator regulation of TRP channels	map04750
			Proteoglycans in cancer	map05205
			Amphetamine addiction	map05031
			Alcoholism	map05034
			Insulin resistance	map04931
			Herpes simplex infection	map05168

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000301s00024490.1	PF00149.23	Metallophos	54	227	1.80E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	57.267
SRR1783600	control	57.657
SRR1783602	moderate drought stress	63.653
SRR1811619	moderate drought stress	62.703

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.979
DRR006520	Root Summer glycyrrhizin high producing strain	55.990
DRR006521	Root Winter glycyrrhizin high producing strain	64.854
DRR006522	Root Winter glycyrrhizin high producing strain	64.128
DRR006523	Root Summer glycyrrhizin low producing strain	103.365
DRR006524	Root Summer glycyrrhizin low producing strain	102.063
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.722
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.952

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.222
SRR2868004	Drought Stress (root)	82.854
SRR2967015	Control (root)	78.806

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.340
SRR9715740	Leaf	68.707
SRR9715741	Leaf	63.753
SRR9715739	Root	58.016
SRR9715742	Root	70.703
SRR9715743	Root	66.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.235
SRR8749028	MeJA induced 9h	76.379
SRR8749029	MeJA induced 9h	130.677
SRR8749030	Uninduced	25.039
SRR8749031	Uninduced	22.763
SRR8749032	Uninduced	60.471

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.280
SRR8400027	Control - Root	76.897