Gene detail

Gene detail information of Glyur000301s00024482

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07050.1	5.00E-79	nodulin MtN21 /EamA-like transporter family protein
NR	KEH42713.1	0	auxin-induced 5NG4-like protein [Medicago truncatula]
COG	YP_003966487.1	1.00E-06	hypothetical protein [Ilyobacter polytropus DSM 2926]
Swissprot	tr\|Q9FL41\|WTR38_ARATH	1.00E-94	WAT1-related protein At5g07050
trEMBL	tr\|A0A072VMP2\|A0A072VMP2_MEDTR	0	Auxin-induced 5NG4-like protein {ECO:0000313\|EMBL:KEH42713.1}

Sequence

Transcript Sequence

>Glyur000301s00024482.1
ATGGAGCAAAATAAATTTTCTCCTTTGCATATATACAGAGAGTTCAAGCCACACTTGCTCATGGTGTTGGCCCAGGTGGGCTATACCTTCTTATATTTTATCACTGAAGCCTCCTTCAACCATGGCATGAGTCCTTATGTGTATGTAACCTATCGGCATGTTGTGGCTGGAGTTGTGATGTTCCCTTTTGCATACTTTCTGGAGAGAAGTGTAAGACCAAAGCTGACATTTGCTCTTTTTGTGGAGATTTTTGTGCTTTCATTGTTCGGGATCAGTTTGACTCTCAATATGTACTTTGCAAGCCTGAAGTACACTTCTCCGACCTTTGTTGCTTCCGTGGTCAACACCATGGCTCCCCTTACCTTCATTATTGCAGTGACACTCAGGTTTGAGGTTCTTGATCTGCGAAATCCTCGTGGAATAGCAAAAGTCCTTGGGACCTTGATTTCCTTAGCTGGGGTAATGACCATGACACTATACAAGGGACCCATTGTGAGAAATTTGTGGCGTCCTCTAATCCATGTCCAACGAGAAAGTGCTGCTATCAATGAGAGCTGGTTAAAGGGTTCACTTCTTACAGTTTTATGCTGTGTTACGTGGTCTATATGGTTCATTATGCAGGCAGCCACTCTGAAAAGATACCCTGCTCAACTGTCACTCACTACGTGGATGTGCTTTGTTGGAGCAGCACAATCAGCTGTTTTCACAGTGATAGCAGAACATAAACATTCAGCATGGACTATAAGGCTCAACATTGACTTGTGGTCCACAATATATGGTGGAATTGTGGTTGCTGGTTTGTTAATGTACATTCAACTATGGTGCACTGAAAAAAAGGGACCGGTTTTTGTCACAATGTTTAACCCTCTCTGTACGATATTTGTGGCAATTCTAGCATACTTCGTCCTTGGTGAAAGACTTTACTTGGGCAGCATCATAGGTGCATTTATTGTCATCATTGGTCTGTACTTGCTGTTGTGGGGCAAAGAAGGTGACCGAGAAGTTCACATCAAGACCAAAGGTAAATCGCAGTGCAACAGTCATGCATGAGGACCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00301	44778	47475	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000301s00024482.1	PF00892.15	EamA	32	157	1.10E-08
Glyur000301s00024482.1	PF00892.15	EamA	198	326	2.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.069
SRR1783600	control	0.070
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.217
DRR006520	Root Summer glycyrrhizin high producing strain	1.187
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.034
DRR006524	Root Summer glycyrrhizin low producing strain	2.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.072

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.301
SRR2868004	Drought Stress (root)	2.181
SRR2967015	Control (root)	1.215

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.739
SRR9715740	Leaf	1.456
SRR9715741	Leaf	0.707
SRR9715739	Root	0.000
SRR9715742	Root	0.674
SRR9715743	Root	0.251

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.610
SRR8400027	Control - Root	6.565