Gene detail information of Glyur000301s00024481 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23200.1 | 1.00E-38 | Uncharacterised protein family (UPF0497) |
| NR | AFK35149.1 | 7.67E-87 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8L7R5|CSPLG_ARATH | 2.00E-69 | CASP-like protein 5B3 |
| trEMBL | tr|I3S4F7|I3S4F7_LOTJA | 3.00E-87 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00301 | 33577 | 38156 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000301s00024481.1 | PF04535.7 | DUF588 | 64 | 192 | 6.60E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.582 |
| SRR1783600 | control | 1.318 |
| SRR1783602 | moderate drought stress | 2.041 |
| SRR1811619 | moderate drought stress | 2.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.161 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.808 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.741 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.506 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.649 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.618 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.206 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.959 |
| SRR2868004 | Drought Stress (root) | 22.943 |
| SRR2967015 | Control (root) | 13.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.514 |
| SRR9715740 | Leaf | 13.596 |
| SRR9715741 | Leaf | 17.741 |
| SRR9715739 | Root | 4.123 |
| SRR9715742 | Root | 4.576 |
| SRR9715743 | Root | 3.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.298 |
| SRR8749028 | MeJA induced 9h | 4.839 |
| SRR8749029 | MeJA induced 9h | 6.667 |
| SRR8749030 | Uninduced | 20.929 |
| SRR8749031 | Uninduced | 15.240 |
| SRR8749032 | Uninduced | 6.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.578 |
| SRR8400027 | Control - Root | 12.035 |