Gene detail

Gene detail information of Glyur000300s00017267

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15960.1	2.00E-171	NRAMP metal ion transporter 6
NR	KEH39635.1	0	NRAMP metal ion transporter 6 [Medicago truncatula]
COG	YP_007200924.1	2.00E-83	natural resistance-associated macrophage protein metal ion transporter NRAMP [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9SAH8\|NRAM1_ARATH	0	Metal transporter Nramp1
trEMBL	tr\|A0A072VNA9\|A0A072VNA9_MEDTR	0	NRAMP metal ion transporter 6 {ECO:0000313\|EMBL:KEH39635.1}

Sequence

Transcript Sequence

>Glyur000300s00017267.1
CAACCTCATCTGGCGTGTGGCCNTAACGGTGAGTGGGATCCGAGACAGGATCAAATCACACTATAAATAAAAGGGACATACTCTCAAAAGTACAACCAGTTAAGGAACAAGACAGGGNAGAGAAGAAGAAGAGGAGAGCGTGTTGCGAACTGCGAAGCGCTTTTTTGTTCGAGGGAATTAATGTGTACTATTTTCTGACCACCACCACTTACCTACTTCTTTGTCTTTGTGTTTTGTTTGCTGCAGAAAGGGAAAAAGAGAGAGAGAGAGAAGATGGCTGTCTCAGGTTCAGGTTCTGGGCAGCCACAGTTCATTTCCAGCACTGGAAACCGAAGCCTTTCCAATGCGCCGCTCATTGAGAACACAGCTACTGATCAAATTGTTGTGCCTGATTTACTTTGGATCATATTGGTGGCATCATGTGCTGCTCTTGTAATTCAAACAATGGCAGCCAATCTTGGAGTGGTTACTGGAAAGCACTTAGCAGAGCATTGTAGAACTGAATATTCCCGGGTGTCCAACTTCATCCTTTGGATTATTGCTGAAATTGCCATTGTGGCCTGTGATATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAATATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTAACAGGACTCAGCACATTGATCCTCTTAGCATTACAACAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTTGTATTTACAATCGCTGCGTGTTTTTGGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTCTGAACGGTCTTTTTGTGCCAGAACTAAAAGGGAGTGGTGCTACCGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCGCACAATCTCTTCCTGCACTCAGCACTGGTGCTTTCTAGGAAAATACCGCGATCAGTTCNTGGAATCAAAGAGGCCTGCAGATTTTACATGATAGAGAGTGCCTTTGCTCTTACGGTGGCCTTTCTCATAAATGTTTCTGTCATTTCTGTAAGCGGTTCTGTTTGCAATTCTTNGAATTTGAATGAAGAAGATCAGATTAACTGTCAGAATTTGGATCTGAACAAAGCTTCCTTCCTACTTAGAAATGTCTTGGGGCAATGGAGTTCAAAGCTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACAATAACAGGAACCTATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGATTGACGCCATGGATTCGGAATATGTTAACCCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCGGTCATTGGTGGCTCTGCCGGGGCTGGGAAGCTCATAATAATTGCATCCATTTCCGCGGTCACTTGGATAATTGGTTCCCTNATCATGGCCATTAATATATACTATTTAATGACTGGCTTCATNAAGCTGCTTCTTCATAGTCACTTAAGAATTGTGGCCAAGGTGTTTCTTGGGCTATTAGGATTTTCGGGTATGGCGGTATATCTGGCCGGCATAGTGTACCTCGTACTCCGGAAAAATAAAGAGGCTACACACCTTTTGGCCCTAACAGCACCAGAAAGTCAGCAGATGGCAAATGGACAAGCCAATGGTTCAATCTATTCTCTTCCAAGAGAAGACATAGTGAACATGCAATTGCCTCAAAGAAGTAGTCCTACAGATCTTGACTGACAAAAAATTGACAATAAGGTAGATCATAGCAAGATAGATTCTGATAGATAAATAAGTCTTATTTTGTTAATTTCTAGAATTGGAAATAGACTAGNAAGAAACTGTCTTCTGGTATCACTAATCACTTGGTTGGAATTGCCAAGCTTTTGATTTTTATGTGATGCCTATCTTGACGAGCTTGTGTTGTGTGGGAAAGACCTTCTATCCTTTCTCCACATTCTTCTCATTGACTCTAGATGCAATTTCTAAAAGAAGGTTTTGTAGAATTCTAAAAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00300	183444	190263	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000300s00017267.1	PF01566.13	Nramp	40	360	6.30E-106

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.449
SRR1783600	control	5.768
SRR1783602	moderate drought stress	4.348
SRR1811619	moderate drought stress	4.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.371
DRR006520	Root Summer glycyrrhizin high producing strain	2.490
DRR006521	Root Winter glycyrrhizin high producing strain	2.374
DRR006522	Root Winter glycyrrhizin high producing strain	2.452
DRR006523	Root Summer glycyrrhizin low producing strain	4.591
DRR006524	Root Summer glycyrrhizin low producing strain	4.097
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.069
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.760

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.847
SRR2868004	Drought Stress (root)	27.257
SRR2967015	Control (root)	19.771

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.923
SRR9715740	Leaf	14.224
SRR9715741	Leaf	35.266
SRR9715739	Root	3.859
SRR9715742	Root	10.352
SRR9715743	Root	8.807

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.716
SRR8749028	MeJA induced 9h	2.948
SRR8749029	MeJA induced 9h	4.647
SRR8749030	Uninduced	1.260
SRR8749031	Uninduced	1.045
SRR8749032	Uninduced	2.938

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.643
SRR8400027	Control - Root	12.982