Gene detail

Gene detail information of Glyur000300s00017256

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G07680.1	0	multidrug resistance-associated protein 11
NR	XP_006595183.1	0	PREDICTED: ABC transporter C family member 13-like isoform X1 [Glycine max]
COG	NP_969385.1	1.00E-138	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q9SKX0\|AB13C_ARATH	0	ABC transporter C family member 13
trEMBL	tr\|K7M409\|K7M409_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G44750.2}

Sequence

Transcript Sequence

>Glyur000300s00017256.1
GTATGGGATGGAAAAGGATTCTCCGAGTGTTTTGAAGACATATATCCTTATTTGAACATAGTGACTATTGTTATGACTGTTGTGCTTGGATTTAATCAAAAGATTGGTCGAGGAGTTCAGAGATCGGATGCCCAGATAACCCTTCCAGAGAAGTTTGTCCTGGGTTTTGTACCAGCTGTTGGAGCATGTTTATCAATCTTGGATGTAATTTTTCTGTGGAAGAAAGAACATGATGGTCACTTTGTTGGATATCATAAGTGGTTTCATAGCTATTCTGAGTTGTTGGTGTGGGTTTCAGTACGCATCATGGAAAGCTTAGTTGTTCTCTTGGATATCTCATTTGGCATAGCTATCAATGTGATTAGGATAAAGAGACTACCTCCCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCCAATGGCGGGGACCTTGAGGAAGGTGGCTATTATGACCTTGGAAATAATGGAAACTTTTGGGATTTGATGACTTTCAAATTCATAACTCCAGTCATGAATCATGGTGTGGTAAAGCAATTAGACTCTGAAGATCTGCTGCCGCTACCACCTGATATGGGTCCTTCTTTCTGTCATGATATAATGTTATCCAGCTGGCGAGCTCAATTGAGTAATAATGGNTCAAACGCTTCCTTGCTTAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCTGCCTGGGTTTATTGAAGGTGATAAATGACTGTATTGGTTTTGCGGGACCATTGCTTCTCAATAAACTGATCAAGTTTCTTCAACAAGGTGATGCAACAAGGAGTAGTTTGTGTTTCTCCATTGTGATCACTAAAATTTTGGCTTGCATCTTTAGCTTTATTTGTTCAGTTAATTTGGATGGGTATTTACTTGCATTATCCTTGGGTCTCACCTCCATAATTAAGCTTCGCTTTACTCATCTACTTCTTATTGCTGTTATTATGGTTTATCCTGAAAATGCCTACATAATAGCGATTANTAAAGCAGTGTCCTTCTGGTCTAGATCATTTTTAGATACACAGTATACTTTCCGTCTTTCCAAACTGAAGCTAAAGCTGCGATCTAGTATCATGACTCTAATCTATGAAAAGTGTCTATATGTGAACCTAGCAGAGCGTTCAAAATTCACAAGTGGAGAAATTCAGACATACATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAATAGTTTCCATGATATGTGGAGCCTGCCTTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTCGCATTTGTATCTGGATTAGCGATAACCATTTTATTGATACCAGTTATTTGTGGATGCTTGGAGTTCCTCAAAGTGTCGATTCGTAGGACTGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGCTGGTTGATGGAGACAAGATCTTTGGAAGTGAAGCACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCAACACTCTTTTCTCTATTCACATTTGGACTCTATGCATTGATGGGACACCAACTTGATGCTGCAATGGTATTTTCAAAGTTGTTCGACCTATTCTTANTGACAAGTTTTTCTTCTGTTTTCACTTGTCTTGCTTTGTTTAACACACTAATTTCACCACTGAATTCATTCCCTTGGGTGATTAATGGATTGATTGATGCCATCATATCCTCCAGACGATTGAGTAGGTTTCTCTCTTGTCCTGAACATAGATTTAAAGTGGGAGAGAACAGTTCCTGTTCATCATCATTCCTGAGTAAACAGCCTGATTCTTTACAAGATTTGGCTGTCTTTATCCAAGATGCATGTTGTACTTGGTCAAGCAGTGATGAACAAGCATTAAATTTGGTGTTGAATCATGTGACTCTAAGCCTGTCCAAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTTTTATATTCAATTCTCGGAGAAATGCGGCTTGCTCATGGATATATTTATTCCAACGGATCTGTAGCTTATGTACCACAGGTCCCTTGGGTTTTATCTGGAACTGTACGTGANAATATATTATTTGGGAAAAGTTATGATCCTGAAAGATATGCGGATACAGTGCAGGCATGTGCATTAGATGTTGATATCTCATTGATGGTTGGAGGTGACATGGCTTATGTTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTAGCAAGGGTACTGTATCATGGCTCAGATATTATTATGCTTGATGANGTCCTCAGTGCAGTCGATGTACAAGTTGCTCAATGGATTTTACACAATGCCATTCTTGGTCCTCTTATGCAGGGAAAAACTCGATTGCTCTGTACCCACAACATTCAGGCAATATCTTCTGCTGATATGATTGTTGTATTGGACAAAGGACACATAAAGTGGATGGGAAGTTCTGCTGACTTTCCAATTTCTTCCTATACAGCATTCTCCCCAATGAATGAAATGGATTCAACTTTACATAATCATAGTCAATCTTGCAGCACAAATTCTTCTTCTAAATCCAAGGAGCAGNCTCTTCCTGATAGAATCATCATGCATGCTCTGGAGGGAGCAGAGGAGGTAATTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTCGAACTTGGAGTTTACAAGAATTATGCTGTCTTCACTGGCTGGTTCATCACAGTTGTTATATGTCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACCACAACAGAACACGGTCAAACAAGTTACTCTGTGTCTTTCTATCTGGCTATACTTTGTCTCTTTTGCATTATGAATGCCCTTTTCACACTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCAGCAACTAAGGTACACAACAGACTGCTTAGCCAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCAGGTGGAAGAATACTGAATAGGTTATCTTCAGATCTTTATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTGGCTAATTTTGTAGGCCTGTTGGGTATTGCAATAATTTTATCTTACGTACAGGTCTTCTTCTTAGTCCTGTTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCGAGAGAATTANGAAGACTGGATAGTGTTTCTCGTTCTCCAATATATATGTCATTCACCGAAACACTTGATGGATCATCAACTATTAGGGCATTTAAATCTGAGGATTTTTTCTTTGCCAAATTCACTGAACATATAACATTATATCAGAAGACTTCCTATACNGAGATAGTGGCGAGTCTGTGGCTTTCCTTGCGTCTTCAGTTGTTAGCTGCATTTATCATCTCNTTCATAGCTCTGATGGCTGTTGTCGGATCTCATGGCAATCTGCCTATCAACTTTGGTACCCCAGGACTGGTTGGATTGGCCCTCTCATACGCAGCTCCAATTGTGTCCCTGTTGGGGAGTTTTTTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCGGTTGAAAGAGTCCTTCAATACATGGATATTCCTCGAGAAGAACAAGCTGGATGTCTATACTTGAATCCAGATTGGCCAGATCAAGGAGTTATTGAATTCCAACATGTTACTTTGAAATATATGCCATCTTTACCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGAAGGAGGGANACAGGTTGGAATAATTGGAAGAACAGGNGCTGGAAAATCTAGTGTGTTAAATGCCCTTTTCCGCCTTACCCCAATATGTGCAGGCTCCATCACAGTTGATGGCATGGACATTCAAAATATTCCTGTCAGAGAACTACGNACACATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCATTAAGGGATAACCTGGATCCATTGAAAATGAATGATGACTTCAAAATTTGGAACGCATTGGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTACTGTAAAGGAATCAGGGATGTCATTTTCAGTTGGCCAGCGGCAGCTTCTATGCCTTGCACGCGCNCTTCTCAAATCTTCGAAGGTTCTCTGTTTGGATGAATGCACCGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAAGTACCATATCCAGTGAATGCAAAGGAATGACAGTGGTCACAATCGCTCACCGGATTTCGACTGTTATAAATATGGACAACATTCTGATTCTTGACCACGGGAACCTGGCTGAACAAGGAAATCCGCAGGTTCTTCTGAAAGATGACACCTCTATATTTTATAGTTTTGTTAAAGCTTCATCCATGTAACCANGGAAAGCGAGTGCTTACATTGATTACGATATCAAACAAGGCACGATCTAGGGTGAGAGACTTGCACANGTCTCTCATCATGAGAGATTGGTNGTANCTGTTGGATATAATAATTTTATATTAAAATGAATCTATGCCACTTAATATGGAATAAATCTCTATCACTTANATATAAAATNATTATATCCANCGACTATCACTAGATCTCTCNCGGTGAGCGACCTATACAGTTCTCTCACCCTAGCCTGGCCCATCAAACAAACGTGGAGTTTGGTCTGTTGTTGGTCTCTAGATATGCGAATATGAACTTGGTGAGGCCATTATTTAACATCACACATCATCCGCAAAGAGTGTCAGAGATGATTCTCTACGGTAGTATCNTATTAGATCTTTTGTTTTGTTGATCAGCTTCTTGTAAAATATCAAACATAAACTGGNTTGTATTTTCTCTGATAAAAGACCATAGATCATTGCAAATGCTGCGCAAGGTGGTCCTTCCAGATCAAATACAACTACAAAGCATGTTTGATTT

Protein Sequence

>Glyur000300s00017256.1
VWDGKGFSECFEDIYPYLNIVTIVMTVVLGFNQKIGRGVQRSDAQITLPEKFVLGFVPAVGACLSILDVIFLWKKEHDGHFVGYHKWFHSYSELLVWVSVRIMESLVVLLDISFGIAINVIRIKRLPPKSSLLEDPLLSNGGDLEEGGYYDLGNNGNFWDLMTFKFITPVMNHGVVKQLDSEDLLPLPPDMGPSFCHDIMLSSWRAQLSNNGSNASLLRALCSAYGWPYLCLGLLKVINDCIGFAGPLLLNKLIKFLQQGDATRSSLCFSIVITKILACIFSFICSVNLDGYLLALSLGLTSIIKLRFTHLLLIAVIMVYPENAYIIAIXKAVSFWSRSFLDTQYTFRLSKLKLKLRSSIMTLIYEKCLYVNLAERSKFTSGEIQTYMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVICGCLEFLKVSIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFSKLFDLFLXTSFSSVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHRFKVGENSSCSSSFLSKQPDSLQDLAVFIQDACCTWSSSDEQALNLVLNHVTLSLSKGSFVAVIGEVGSGKSSLLYSILGEMRLAHGYIYSNGSVAYVPQVPWVLSGTVRXNILFGKSYDPERYADTVQACALDVDISLMVGGDMAYVGEKGVNLSGGQRARLALARVLYHGSDIIMLDXVLSAVDVQVAQWILHNAILGPLMQGKTRLLCTHNIQAISSADMIVVLDKGHIKWMGSSADFPISSYTAFSPMNEMDSTLHNHSQSCSTNSSSKSKEQXLPDRIIMHALEGAEEVIEVELRKEGKVELGVYKNYAVFTGWFITVVICLSAILMQASRNGNDLWLSYWVDTTTEHGQTSYSVSFYLAILCLFCIMNALFTLVRAFSFAFGGLQAATKVHNRLLSQLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELXRLDSVSRSPIYMSFTETLDGSSTIRAFKSEDFFFAKFTEHITLYQKTSYTEIVASLWLSLRLQLLAAFIISFIALMAVVGSHGNLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLQYMDIPREEQAGCLYLNPDWPDQGVIEFQHVTLKYMPSLPAALCNLSFRIEGGXQVGIIGRTGAGKSSVLNALFRLTPICAGSITVDGMDIQNIPVRELRTHLAIVPQSPFLFEGSLRDNLDPLKMNDDFKIWNALEKCHVKEEVEVAGGLDITVKESGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQSTISSECKGMTVVTIAHRISTVINMDNILILDHGNLAEQGNPQVLLKDDTSIFYSFVKASSM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00300	95699	108789	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000300s00017256.1	PF00005.22	ABC_tran	637	768	8.00E-16
Glyur000300s00017256.1	PF00664.18	ABC_membrane	913	1179	2.00E-32
Glyur000300s00017256.1	PF00005.22	ABC_tran	1252	1398	4.00E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.915
SRR1783600	control	2.956
SRR1783602	moderate drought stress	8.136
SRR1811619	moderate drought stress	7.949

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.812
DRR006520	Root Summer glycyrrhizin high producing strain	9.741
DRR006521	Root Winter glycyrrhizin high producing strain	0.435
DRR006522	Root Winter glycyrrhizin high producing strain	0.428
DRR006523	Root Summer glycyrrhizin low producing strain	5.145
DRR006524	Root Summer glycyrrhizin low producing strain	5.142
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.683
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.682

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.253
SRR2868004	Drought Stress (root)	18.926
SRR2967015	Control (root)	16.944

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.695
SRR9715740	Leaf	8.168
SRR9715741	Leaf	5.820
SRR9715739	Root	1.129
SRR9715742	Root	10.957
SRR9715743	Root	8.076

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.399
SRR8749028	MeJA induced 9h	1.336
SRR8749029	MeJA induced 9h	0.599
SRR8749030	Uninduced	0.386
SRR8749031	Uninduced	0.451
SRR8749032	Uninduced	0.280

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.682
SRR8400027	Control - Root	7.865