Gene detail information of Glyur000300s00017250 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15350.1 | 7.00E-21 | early nodulin-like protein 17 |
| NR | XP_007023451.1 | 4.92E-79 | Early nodulin-like protein 17 isoform 2 [Theobroma cacao] |
| Swissprot | tr|Q39131|LAML_ARATH | 9.00E-35 | Lamin-like protein (Precursor) |
| trEMBL | tr|A0A061G9G3|A0A061G9G3_THECC | 2.00E-79 | Early nodulin-like protein 17 isoform 2 {ECO:0000313|EMBL:EOY26073.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00300 | 55154 | 56013 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000300s00017250.1 | PF02298.12 | Cu_bind_like | 38 | 117 | 1.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 69.099 |
| SRR1783600 | control | 71.704 |
| SRR1783602 | moderate drought stress | 51.030 |
| SRR1811619 | moderate drought stress | 47.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.280 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.079 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.009 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.233 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.997 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.210 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.446 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.222 |
| SRR2868004 | Drought Stress (root) | 22.436 |
| SRR2967015 | Control (root) | 20.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.204 |
| SRR9715740 | Leaf | 2.430 |
| SRR9715741 | Leaf | 2.008 |
| SRR9715739 | Root | 21.396 |
| SRR9715742 | Root | 15.230 |
| SRR9715743 | Root | 12.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.140 |
| SRR8749028 | MeJA induced 9h | 3.122 |
| SRR8749029 | MeJA induced 9h | 6.576 |
| SRR8749030 | Uninduced | 0.836 |
| SRR8749031 | Uninduced | 1.146 |
| SRR8749032 | Uninduced | 2.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.002 |
| SRR8400027 | Control - Root | 27.671 |