Gene detail

Gene detail information of Glyur000300s00017248

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16010.3	4.00E-179	magnesium transporter 2
NR	XP_003546700.1	0	PREDICTED: magnesium transporter MRS2-1-like [Glycine max]
Swissprot	tr\|Q9S9N4\|MRS21_ARATH	0	Magnesium transporter MRS2-1
trEMBL	tr\|I1MC99\|I1MC99_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G00510.1}

Sequence

Transcript Sequence

>Glyur000300s00017248.1
GGGGNCCTCTTGTTCTTTCTTCCATGAACTCACACAGCGAGAGATAGAGTACGCACATCGGACTGAAGTTTTGTTCTCGATGATTCGGCGGCTATCAAATTCAATCACAATCTCTCTCTCTTTCAGAGTTATCTTAATCGCATACCCACATCGGATTTAAGGCAAATTCCGGATATTATTCTATCTTCTGTTGAATAACACCCTGTTTTTTTTAACCCTGGAGTTATGGTGTGGCCAAAGCAAGCTTGTGAGAGGAGCCAATAANGACATGGTCCTCGTCGTCCTCCCACGATCTTGCAGTTGTCAGAGATTTTTTTTTGTCATTCAGGCCATGATGTCACTTAATATATAATGGGAGATTCGTATTAGATGCATACTCCATCTGTTGAGGCCACAACACAATTAGCAAACCTCCATAATGGCAGATCTCAAAGAGCGGCTACTCCCACCAAAACCTGCATCGGCTTTAAACGTAAGAGAGGCTGCTAATCGACCATCTGCCTCAGGAAGGCAATCTTTTCAAGGAGTGGATGTTCTGGGGCTGAAGAAGCGAGGCCAAGGTCTTCGATCATGGATTCGTGTTGACACATCAGGAAACTCTCAGGCCATTGAGGTAGACAAGTTTACCATGATGCGACGTTGTGATCTACCTGCACGCGATCTTCGCCTACTCGATCCTCTGTTTGTCTACCCATCAACAATCCTTGGTAGGGAAAAGGCTATTGTTGTAAATCTAGAGCAGATACGGTGTATTATCACAGCAGATGAGGTTCTTCTCTTGAATTCCCTTGATAGTTATGTNTTGCATTATGTGATGGAGCTCCAAAGACGGTTGACAACAAATGGGGCAGGCGAGGTCTGGCAATCGGACAGTTCTGACATGAACCGAAGGAGAGGTAGTAGGAATTTTGAAAATACATTTAGCAACACTTCCCCTGATTATTTACCTTTTGAGTTTCGAGCTCTTGAAGTTGCCCTGGAGGCAGCATGCACATTTCTTGACTCCCAGGCAGCGGAGTTAGAAATTGAGGCTTACCCGTTGCTGGATGAACTGACATCAAAGATCAGTACCCTAAATTTGGAACGTGTTCGTCGGTTGAAAAGCAGACTTGTTGCCCTGACTAGGAGGGTTCAGAAGGTGGTTAGAGATGAAATAGAGCAGCTTATGGATGATGATGGTGATATGGCTGAAATGTATCTTACNGAGAAGAAAAGACGGATGGAGTTGTCATTTTATGGAGATCAGTCTATGGTTGGATATAGATCAGTTGATGGCGCTTCCATCTCTGCTCCGGTCTCTCCTGTTTCATCTCCTCCTGATTCTCGGAGGCTTGAAAAGAGCTTGAGCATTGCTAGAAGTCGACATGAGAGCATGAGGAGTAGTGAAAGTAATACAGAAAATATAGAAGAGCTTGAGATGTTGTTGGAAGCATANTTTGTTGTCATTGACAGCACTCTAAACAAGTTGACATCGTTGAAAGAGTACATCGATGACACGGAAGATTTCATCAACATTCAACTGGATAATGTTCGCAATCAGCTTATCCAGTTTGAGCTTTTACTCACAACTGCAACATTTGTGGTTGCCATCTTTGGAGTGGTGGCAGGAATATTTGGGATGAATTTTGAGATTCCATTGTTTGATGTCCCCTCTGCATTCCAATGGGTCCTTATAATAACAGGAGATAATGTTCGCAATCAGCTTATCCAGTTTGAGCTTTTACTCACAACTGCAACATTTGTGGTTGCCATCTTTGGAGTGGTGGCAGGAATATTTGGGATGAATTTTGAGATTCCATTGTTTGATGTCCCCTCTGCATTCCAATGGGTCCTTATAATAACAGGAGTTTGTGGAGTCTTCATATTTTCCGCATTTGTGTGGTTCTTCAAGTACAGAAGACTCATGCCCCTATAAGAAGGAGCTACAGTCTACACTACCATGAACAAGATCAAACAATGAACAAGATCAAACAATTGCATGGTATTGGTGGCTATGATGTTCTGCGTTTGCCGTGCAATCATAAAAAATCAAATGAAAAGCCGGCCCATATGAAAAAAAGCAATTCTTTCAATTCAATTTTGTATCAGTTTTAGGCAATTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00300	45356	50284	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015693 magnesium ion transport

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015095 magnesium ion transmembrane transporter activity

GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000300s00017248.1	PF01544.13	CorA	307	420	1.90E-06
Glyur000300s00017248.2	PF01544.13	CorA	306	435	9.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.649
SRR1783600	control	3.526
SRR1783602	moderate drought stress	3.636
SRR1811619	moderate drought stress	3.348

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.091
DRR006520	Root Summer glycyrrhizin high producing strain	6.229
DRR006521	Root Winter glycyrrhizin high producing strain	5.056
DRR006522	Root Winter glycyrrhizin high producing strain	4.823
DRR006523	Root Summer glycyrrhizin low producing strain	8.896
DRR006524	Root Summer glycyrrhizin low producing strain	8.003
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.097
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.044

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.890
SRR2868004	Drought Stress (root)	14.061
SRR2967015	Control (root)	16.710

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.979
SRR9715740	Leaf	14.830
SRR9715741	Leaf	12.619
SRR9715739	Root	1.336
SRR9715742	Root	5.437
SRR9715743	Root	4.986

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.303
SRR8749028	MeJA induced 9h	8.014
SRR8749029	MeJA induced 9h	5.152
SRR8749030	Uninduced	7.062
SRR8749031	Uninduced	4.347
SRR8749032	Uninduced	4.575

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.791
SRR8400027	Control - Root	7.844