Gene detail information of Glyur000299s00021248.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37790.1 | 1.00E-27 | Homeobox-leucine zipper protein family |
| NR | XP_004488070.1 | 6.07E-71 | PREDICTED: homeobox-leucine zipper protein HAT2-like [Cicer arietinum] |
| Swissprot | tr|A5Y7H8|HAT4_ARATH | 5.00E-44 | Homeobox-leucine zipper protein HAT4 |
| trEMBL | tr|G7IIE0|G7IIE0_MEDTR | 2.00E-71 | Homeobox associated leucine zipper protein {ECO:0000313|EMBL:AES65383.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00299 | 204861 | 206220 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000299s00021248.1 | PF00046.24 | Homeobox | 75 | 129 | 4.80E-15 |
| Glyur000299s00021248.1 | PF02183.13 | HALZ | 131 | 166 | 5.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.502 |
| SRR1783600 | control | 1.704 |
| SRR1783602 | moderate drought stress | 2.059 |
| SRR1811619 | moderate drought stress | 2.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.169 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.077 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.509 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.621 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.429 |
| SRR2868004 | Drought Stress (root) | 1.932 |
| SRR2967015 | Control (root) | 5.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.119 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.462 |
| SRR9715739 | Root | 0.461 |
| SRR9715742 | Root | 1.015 |
| SRR9715743 | Root | 1.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.710 |
| SRR8749028 | MeJA induced 9h | 0.850 |
| SRR8749029 | MeJA induced 9h | 0.919 |
| SRR8749030 | Uninduced | 2.902 |
| SRR8749031 | Uninduced | 4.845 |
| SRR8749032 | Uninduced | 1.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.245 |
| SRR8400027 | Control - Root | 2.258 |