Gene detail

Gene detail information of Glyur000299s00021245

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25810.1	7.00E-114	xyloglucan endotransglycosylase 6
NR	KHN22640.1	2.17E-170	Putative xyloglucan endotransglucosylase/hydrolase protein 23 [Glycine soja]
COG	YP_004641534.1	1.00E-13	beta-glucanase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q38910\|XTH23_ARATH	8.00E-148	Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBL	tr\|V7CCR5\|V7CCR5_PHAVU	1.00E-170	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}

Sequence

Transcript Sequence

>Glyur000299s00021245.1
ATTCCATTCTTCACCAAATACATCACACATCACTTGGTCTTTCCTCCCTCTTAATTCTAACATTGGTTGCTATAGTCACCAACCANAACCAAAGGCATATTGCTTTGAAAAGGTTGTTGTTTTGAAATGAAAAATAAGTTCCCTATTGAGTTTCTTCTCCTTGTNGCAGCCACCTTTGTGGTGGTAGCCTCAGCTGGTAATAACTTTTTCAAAGACTTTGAATTAACATGGGGTGATGGCCGTGCCAAAATCCTTGAAAATGGACAACTTCTCACCCTCTCCTTAGACAAAGCCTCTGGCTCTGGCTTTCGTTCCAAAAATGAGTACTTGTTTGGAAAAATTGACATGCNACTCAAACTTGTGCCTGGTAACTCTGCTGGCACTGTCACAGCCTATTATCTATCTTCTCTAGGGTCTGCTCATGACGAAATAGACTATGAATTTCTGGGTAACTTGAGTGGTGATCCATACATTCTTCACACCAACGTATTCACACAAGGGAAAGGGAATAGAGAGCAGCAGTTCTATTTGTGGTTCGACCCCACCAAGGACTTCCACACATATTCCATTCTTTGGAATCCTCGAAGCATCATATTCTCTGTGGATGGGACACCAATAAGGGAGTTCAAGAATTTGGAGCCAAAAGGGGTAGCTTTCCCAAAGAACCAAGCCATGAGGATATACTCAAGTCTTTGGAACGCTGATGATTGGGCCACAAGGGGTGGGCTTGTGAAGACGGATTGGGCCCAAGCCCCATTCACTGCCTCATATAGAAGCTTCAATGCCCAAGCTTGTGTTTGGACTTCTTCTTCAGGCTCCTCTTGTTCTTCTTCCANCAATAAATCTCCATCATCATGGTTTGGACAATCCTTGGATGCTACTGGGCAAGCCAAAATCCATTGGGTGCAAAAGAACTACATGATTTACAATTATTGCACTGATTCCAAGCGTTTCCCACAAGGACTCCCTCCTGAATGTTCATTTGCAGGAAATTGAAAACCATTTACACATATGGAAAAAGCTCCCATATAGGAGGCATGTCATNCCCGTGATNTAGTTCAAGTGGTTAAAGAGCTCGGTTATATGTAAGAGNGTGGGGGTTGGATCAACCCNTGTNTGTGNGAGTAATGACNAAAAAAAAGGATGCATGCCATATATACATTGATCTTGTGTAAATTAATAATTCAAACTAGGATTGAATATTGTATGTTTATGTTTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00299	166914	169410	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH16

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006073 cellular glucan metabolic process

cellular_component

GO:0005618 cell wall

GO:0048046 apoplast

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762 xyloglucan:xyloglucosyl transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000299s00021245.1	PF00722.16	Glyco_hydro_16	29	207	2.90E-60
Glyur000299s00021245.1	PF06955.7	XET_C	238	284	4.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.610
SRR1783600	control	19.736
SRR1783602	moderate drought stress	291.684
SRR1811619	moderate drought stress	290.510

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.443
DRR006520	Root Summer glycyrrhizin high producing strain	2.387
DRR006521	Root Winter glycyrrhizin high producing strain	6.862
DRR006522	Root Winter glycyrrhizin high producing strain	6.820
DRR006523	Root Summer glycyrrhizin low producing strain	5.845
DRR006524	Root Summer glycyrrhizin low producing strain	6.140
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.456
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.455

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	108.777
SRR2868004	Drought Stress (root)	138.731
SRR2967015	Control (root)	261.286

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.949
SRR9715740	Leaf	8.439
SRR9715741	Leaf	40.025
SRR9715739	Root	54.500
SRR9715742	Root	12.446
SRR9715743	Root	16.357

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	695.525
SRR8749028	MeJA induced 9h	955.675
SRR8749029	MeJA induced 9h	814.540
SRR8749030	Uninduced	885.761
SRR8749031	Uninduced	1466.176
SRR8749032	Uninduced	1953.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	61.252
SRR8400027	Control - Root	67.193