Gene detail information of Glyur000299s00021237 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29720.1 | 5.00E-170 | polyamine oxidase 5 |
| NR | XP_003546459.1 | 0 | PREDICTED: probable polyamine oxidase 5-like [Glycine max] |
| COG | YP_007160901.1 | 5.00E-28 | Polyamine oxidase [Cyanobacterium aponinum PCC 10605] |
| Swissprot | tr|Q9SU79|PAO5_ARATH | 0 | Probable polyamine oxidase 5 |
| trEMBL | tr|K7MBX1|K7MBX1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G18441.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00299 | 70661 | 72451 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12259 | SMOX, PAO5 | EC:1.5.3.16 1.5.3.- | Arginine and proline metabolism | map00330 |
| beta-Alanine metabolism | map00410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000299s00021237.1 | PF01593.19 | Amino_oxidase | 15 | 585 | 8.50E-76 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.779 |
| SRR1783600 | control | 1.777 |
| SRR1783602 | moderate drought stress | 2.747 |
| SRR1811619 | moderate drought stress | 2.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.594 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.567 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.368 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.377 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.680 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.713 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.413 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.305 |
| SRR2868004 | Drought Stress (root) | 22.040 |
| SRR2967015 | Control (root) | 26.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.667 |
| SRR9715740 | Leaf | 0.593 |
| SRR9715741 | Leaf | 0.381 |
| SRR9715739 | Root | 4.737 |
| SRR9715742 | Root | 11.875 |
| SRR9715743 | Root | 9.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.396 |
| SRR8749028 | MeJA induced 9h | 1.174 |
| SRR8749029 | MeJA induced 9h | 0.647 |
| SRR8749030 | Uninduced | 0.107 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.084 |
| SRR8400027 | Control - Root | 14.148 |