Gene detail

Gene detail information of Glyur000298s00025040

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12980.1	6.00E-111	Auxin-responsive family protein
NR	XP_003622762.1	0	Auxin-induced in root cultures protein [Medicago truncatula]
Swissprot	tr\|Q9LSE7\|B561C_ARATH	9.00E-160	Cytochrome b561 and DOMON domain-containing protein At3g25290 (Precursor)
trEMBL	tr\|G7KY03\|G7KY03_MEDTR	0	Auxin-responsive family protein {ECO:0000313\|EMBL:AES78980.1}

Sequence

Transcript Sequence

>Glyur000298s00025040.1
CCCCTGTTCTTCGCTTCCCCTTCAATTCCCACCTTACAATCATTAACTTCACCAACTCATCATCCTCTCTATATAAAAACCCAAAAAAATACCCAAAAAAACAAACAGAAAGAAAGAAAATTGAAAAAAAAAAAAATACTAGCATACATTTTCTCTTCATCTTCTTCCTCTGTTTTAACAATGGCGCCACCTTCAATTCTGGTGCTATTGTTCCTTCTCCTCTCGCTGTTCGCGTCCTATTGTTCCTCCCTCACGTGCACAACCCAGAAGCTAACGGGGTCGAACAAGGTCTACCCAAACTGTGTAGACCTCCCCGCACTGGATTCATTCCTCCACTGGACCCACGACACCGCGAATTCCTCCCTCTCGGTGGCGTTCGTGGCAACACCTCCGAGTCCAGGAGGGTGGGTGTCGTGGGGTATAAACCCCACCAGCACCGGCATGGCGGGTGCACAGGTGCTGGTGGCGTTTAAAGGAAACGACGGCGTCGTTTCGGTGAAGACGTTTGACCTCAAGTCATACAGCGCCATTGTTCCTGGGAAGCTTTCGTTTGACGTGTGGGATTTGAGGGCAGAGGAAGAGGGTGGGGCTATTAGGATCTTCGCCACCGTTAAGGTGCCNGAGAATGCTAACGCCGTTAACCATGTTTGGCAGGTGGGGCCCTCCGTTACTGCGGGGAGGTTGGATAAGCATGAGTTTAAACCTCCTAATTTGAATTCCAAAGGGAGGCTCAGCCTGAATGGTGGAGCTCAGGGTGGTGCTGGTTTTTCTGGGGATGATGGTGCCGTCGACTTCAGAACCAAGAAGAAAAATATTCATGGAGTACTAAATGCGGTGAGTTGGGGTTTCCTGTTTCCACTTGGAGTGATCATAGCAAGGTACATGAGGGTTTTCCCATCAGCTGATCCAGCTTGGTTCTATCTCCATGTTGGTTGCCAATTATCTGCTTATGTCATTGGGGTTGCTGGTTGGGGAACTGGCATGAAACTTGGAAGCGAATCAGAGGGGATTCAATACAGTCCTCATCGCAACATTGGAATCACAGTCTTTTGTCTCGCCACTATACAGATTTTTGCATTGTTCCTCAGGCCAAAAAAGGATCACAAGTATAGATTTTTCTGGAATATCTACCACCATAGCTTTGGATATGCCATCATTATCCTTGGAATTTTCAACATTTTCGGAGGCTTTCACATTTTGAGCCCTGAGAAGAAATGGAAATCAGCTTACATTGTAGTGATCACTGTATTGGCTGTGGTTGCATTGTTGTTGGAAGTGTTCACATGGATTGTTGTGTTGAAGAGAAAGTGTAGCAAATCCACCAAAACCTATGATGGATACAGCAACAATGGACAAAGCAGGCAACAACACCTTAACATATAAATCAATGTGTTCTGCTGCTTCCCCTTCCTTTTTTTTTATCCTATTTATTACTACATATTTTTGTACAATGATTTGGTTTCACACTGGTTCCAGGGTACGTATATATTTTTCGTTCTCTCTTTAGGTTAATGAAAAGTTTTTATCATGCTTGTATGTATGTTGGGGGCTTAATTCCCAAGAAGGATTGATTATGTTTTCTCTACATGCGCCATTGTTGCAATAAACACATCCTCTACCAACATCGTGTGACTCGGGACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00298	192409	195404	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000298s00025040.1	PF04526.8	DUF568	88	186	1.50E-32
Glyur000298s00025040.1	PF03188.11	Cytochrom_B561	220	337	3.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.893
SRR1783600	control	10.517
SRR1783602	moderate drought stress	10.055
SRR1811619	moderate drought stress	9.807

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.651
DRR006520	Root Summer glycyrrhizin high producing strain	45.622
DRR006521	Root Winter glycyrrhizin high producing strain	0.134
DRR006522	Root Winter glycyrrhizin high producing strain	0.132
DRR006523	Root Summer glycyrrhizin low producing strain	21.361
DRR006524	Root Summer glycyrrhizin low producing strain	21.454
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.883
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.179

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.433
SRR2868004	Drought Stress (root)	31.706
SRR2967015	Control (root)	36.029

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.972
SRR9715740	Leaf	6.964
SRR9715741	Leaf	3.874
SRR9715739	Root	4.071
SRR9715742	Root	12.493
SRR9715743	Root	9.947

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.087
SRR8749028	MeJA induced 9h	0.123
SRR8749029	MeJA induced 9h	0.145
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.035

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.076
SRR8400027	Control - Root	52.386