Gene detail

Gene detail information of Glyur000298s00025034

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05810.1	5.00E-93	RAB GTPase homolog A5E
NR	XP_004492211.1	7.13E-138	PREDICTED: ras-related protein RABA5b-like [Cicer arietinum]
COG	YP_008431664.1	2.00E-24	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q9SRS5\|RAA5B_ARATH	5.00E-117	Ras-related protein RABA5b
trEMBL	tr\|Q08145\|Q08145_PEA	1.00E-135	GTP-binding protein {ECO:0000313\|EMBL:BAA02108.1}

Sequence

Transcript Sequence

>Glyur000298s00025034.1
CCGCAAATCACAAAAATACCCGCCACTAATCACGCGGCATGCCCCAAAAAACAAAATGGAGTAGTAGTATTCATCACTATTTATTCCTTTATAAATATTAAATAAATAAAAAAGGAAACCCCCCAAAAACCCCACACACACGCACGACACAATCACAATTAATTGTCTTCACGTTCTTCCTTTCCATCCACACCACAAACTCAAACACACTCTCTCTCTTCATTTTTATCATCTTCGAGTTTGAGCAACAACAACAACAAAGAAGAAGAAGAAGAAGAAGTAGAATTAATGGAGGATGAGAATGGGGAAGGGTGTGGGGAGGAGTACCTGTTGAAGATCGTGCTGATAGGTGACTCAGCGGTGGGGAAGTCGAACCTGCTGTCACGGTTCGCTCGGAACGANTTCGAGGCGAACTCGAAGGCGACGATAGGGGTTGAGTTCCAGACGCAGGTGGTTGAGATCGACGGCAAGGAAGTCAAGGCTCAGATCTGGGACACCGCCGGTCAGGAGCGGTTCAGGGCCGTCACTTCCGCTTACTACAGGGGCGCTGTTGGCGCACTCGTTGTCTATGACATCACTCGCCGTGGTACCTTTGATAGCGTCAAGCGCTGGATTGATGAGCTCACTACTCAAAATGATAGCACCATAGCAAGAATGTTGGTGGGAAACAAGTGTGATTTGGAGAATATAAGAGAGGTGAGCATAGAGGAGGGCAAGAGTCTTGCAGAAGCAGAAGGCTTGTTCTTCATGGAGACATCAGCACTCGATTCTACCAATGTCCAAGCAGCTTTCGAGATTGTGATCCGTGAAATCTACAACAACATCAGCCGTAAGGTCTTGAACTCTGATTCCTATAAGGCCGAGCTGTCAGTGAATCGAGTAAGCCTGGTTAATGGGGCAGGATCAAAGCAAAGCCGGTTTAATTTTTCTTGTTGTTCTTGATGAGGCTTTTAGCATTGACTTGGAATGGTTCTATACTTCTTTGCNTCTTTCAAGAGTAGTTTGTGGTTCTATACTTCTTTTTTTTCTTTTTCTTTTTGGGGTCTTTTTCCCTAGTTATGGTGGCTACTATTTCTTGGCTTTCTNTGTTTCCTTTTTCATTTCCTGCTCCAAGTTTGAGTTCCTAGGAGCCTTATCCCAACCATTTGGGAAGAGAAGAAAAGAAATGAAAAGAAACGGGAAATGTTTTGCTCTCCCATGAATTTGCTAAGTATGATGTTCAACTATCACTTGGCGCTTCTGATAGGTTAGGTGTTCAGTTCTTAAATATATTCTCTTTGTATTTGTTAGACAAATTATGATATAAATTTCTAGATAATTGCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00298	102426	117504	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000298s00025034.1	PF00071.17	Ras	16	176	1.10E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.296
SRR1783600	control	32.109
SRR1783602	moderate drought stress	13.528
SRR1811619	moderate drought stress	13.700

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.753
DRR006520	Root Summer glycyrrhizin high producing strain	42.935
DRR006521	Root Winter glycyrrhizin high producing strain	9.261
DRR006522	Root Winter glycyrrhizin high producing strain	8.936
DRR006523	Root Summer glycyrrhizin low producing strain	37.074
DRR006524	Root Summer glycyrrhizin low producing strain	37.881
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.993
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.728

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.051
SRR2868004	Drought Stress (root)	43.486
SRR2967015	Control (root)	38.546

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	69.016
SRR9715740	Leaf	73.877
SRR9715741	Leaf	68.503
SRR9715739	Root	34.457
SRR9715742	Root	35.064
SRR9715743	Root	35.804

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.468
SRR8749028	MeJA induced 9h	26.704
SRR8749029	MeJA induced 9h	44.104
SRR8749030	Uninduced	8.976
SRR8749031	Uninduced	4.569
SRR8749032	Uninduced	11.855

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	94.805
SRR8400027	Control - Root	92.080