Gene detail

Gene detail information of Glyur000297s00023405

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06530.2	0	ABC-2 type transporter family protein
NR	XP_004497624.1	0	PREDICTED: ABC transporter G family member 22-like [Cicer arietinum]
COG	YP_008149444.1	1.00E-41	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q93YS4\|AB22G_ARATH	0	ABC transporter G family member 22
trEMBL	tr\|K7K9E6\|K7K9E6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G34070.2}

Sequence

Transcript Sequence

>Glyur000297s00023405.1
ATGATGGAGAGAGGGAATTCAACAACAACATCATCGGCGACAGCGGTACTGGGGTTGGGGAGAACGAAATCGGAGCAGCTGGTGGAGTCGTCGATGATGATGGTGAAGTCGTCGCCGGCGTCGAGTGAGCACTCGGCGGAAGGGTCGTCGACGACGGTGTCGCGGAAGTCGAGCCGGCGGCAAGGGAACAAGAACACGCACATAAGGAAGTCTCGGAGCGCTCAGATGAAGATAGAAGTGGATGAGTTGTGCAATACTGGGGCGGTTCTTAGTCGGGCCTCCAGTGCCAGTTTGGGCCTCTCTTTCTCCTTCACTGGCTTCACTATGCCCCCTGAAACCTCTGACTCCAAACCCTTCAGTGACGATGATTTCATTCTGGAGGATATTGAAGCTGGAACTAGGACAAAGTTTCAAACAGAGCCTACTCTGCCAATATATCTAAAGTTCACAGATGTGACCTACAAGGTAGTGATCAAAGGCATGACAACAAGTGAGGAGAAGGATATCTTGAATGGGATCACTGGTTCTGTAAATCCAGGTGAAGTCTTGGCATTGATGGGTCCCTCTGGAAGTGGAAAGACAACTCTTTTGAATCTCCTTGGAGGAAGGCTAAGTCAGCCCACTATTGGTGGTTCCATCACTTACAATGACCAATCATATTCCAAGTTCCTCAAGAGCAGGATAGGATTTGTGACACAAGATGATGTTCTGTTTCCTCACCTAACTGTGAGAGAGACATTGACGTATGCAGCCAGGCTAAGACTGCCACAGACATTCACAAAGGAGCAAAAGGAAAAACGAGCTTTAGATGTCATCTATGAGCTTGGCTTGGAGAGGTGCCAAGACACTATGATTGGAGGTTCCTTTGTTCGGGGAGTATCTGGTGGAGAGAGGAAGAGAGTTTGTATTGGCAATGAGATCATAATCAACCCTTCCATTCTGTTTCTTGATGAACCAACATCTGGTTTGGATTCAACTACAGCCTTGAAGATCGTTCAGATGCTGCAAGACATAGCAGAGGCTGGTAAAACAGTAGTGACAACAATCCACCAACCATCAAGCAGACTCTTTCACAAATTTGACAAGTTGATCCTTCTTGGGAAAGGGAGCTTGCTTTACTTTGGGAAAGCATCAGAAGCAATGAACTACTTCCAATCCATAGGATGTTCACCACTTATTTCCATGAACCCAGCAGAGTTTTTGCTAGACCTTGCTAATGGAAACATAAATGATGTTTCCCTACCATCAGAGTTGGAGGATAGAGTGCAAATGGGAAATGCAGTAGCTGAAACACATAATGGGAAACCATCACCAGCAGTTGTCCATGAGTATCTGGTGGAGGCATATGAAACTCGAGTTGCGGAAACAGAGAAGAAAAAAATAATGGTTTCTATCCCCCTAGATGCAGCGTCCAAAGTATGTTGTCCTAAAAGACAATGGGGAGCAAGTTGGGATGAGCAATACTCCATACTATTTTGGAGAGGAATCAAAGAAAGGAGGCATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTTTATCCACTGCAATCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAAGAACCCAAAAGATCTGCAAGATCAGAGAGCAATGCTGACTAAGGAAAGAGCAGCAGATATGTACAGATTGAGTGCATACTTCTTGGCTAGAACTACAAGTGACCTTCCTCTAGACCTGATATTACCAGTCCTTTTTCTCCTTGTTGTGTATTTCATGGCTGGTCTGAGACTAAGTGTTGCCCCCTTCTTCTTCACTATTCTCACTGTTTTCCTCTGCATCGTTGCGGCTCAGGGTCTTGGACTTGCTATTGGGGCCACACTCATGGACTTGAAAAGAGCAACAACTTTGGCTTCTGTAACTGTGATGACCTTCATGCTGGCTGGAGGATTTTTTGTGCAGAAAGTCCCAATATTCATTTCTTGGATCCGCTACATGTCATTCAACTACCACACCTACAAGCTTTTGCTGAAGGTGCAATATGAACACATCACACCTAGCAATAGCATAAATGGGGTCAAAATTGACAGTGGTTTAACAGAGGTAGCTGCTCTGATTGCCATGGTTTTTGGCTACCGCTTCTTGGCATATCTTTCTCTGCGGCGAATGAAACTTCAATCTGGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00297	189106	202686	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000297s00023405.1	PF00005.22	ABC_tran	170	321	1.10E-28
Glyur000297s00023405.1	PF01061.19	ABC2_membrane	537	669	9.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.122
SRR1783600	control	10.971
SRR1783602	moderate drought stress	10.724
SRR1811619	moderate drought stress	10.777

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.647
DRR006520	Root Summer glycyrrhizin high producing strain	4.666
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.056
DRR006524	Root Summer glycyrrhizin low producing strain	0.961
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.850
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.750

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.341
SRR2868004	Drought Stress (root)	8.157
SRR2967015	Control (root)	4.781

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.223
SRR9715740	Leaf	27.673
SRR9715741	Leaf	37.368
SRR9715739	Root	0.996
SRR9715742	Root	3.519
SRR9715743	Root	2.062

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.385
SRR8749028	MeJA induced 9h	0.171
SRR8749029	MeJA induced 9h	0.437
SRR8749030	Uninduced	0.247
SRR8749031	Uninduced	0.073
SRR8749032	Uninduced	0.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.647
SRR8400027	Control - Root	1.257