Gene detail

Gene detail information of Glyur000297s00023404.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G06820.1	carotenoid isomerase
NR	XP_003519091.1	PREDICTED: prolycopene isomerase, chloroplastic-like isoform X1 [Glycine max]
COG	YP_007132658.1	carotene isomerase [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q8S4R4\|CRTSO_SOLLC	Prolycopene isomerase, chloroplastic (Precursor)
trEMBL	tr\|I1JGC5\|I1JGC5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G34060.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000297s00023404.1
CCGTTATTTGTCGTTGTCTTCACGAGGAATCAATTTTATGAGTAAGTGGAATCAGCACCATTATCAATGGCATTGTCAAATTGTCATACACAACACACTTTCCACTTCTCCACCTCCATCTACCACCCACCATGCTCAATTTCCCTTTGCTCTCCGTTTCTGAGCACGCCTTTTCCTACAACCCTGCCACCTACACTTCTCATATTCTCACTCCCCATCATCACATCCCAACGCGGGTCACTTCTCAAAACCTCAACTTGTTGCGGCCAAAGTTTCAATCTTTAGCCTTCGGAGGAAGCAAGTTTGCATCTGGGTCCTGCCCCAATGCTCCGAGGCGCAGAGAATCGAGAGAGAATGGTCGTAGAGGAAAAGGGACGTTGGCGGCGGGGCCAAAAGCGACGCTGAGATTGGAGGGTGGGAAGAGAGGTGAAGGTGGGTTTGATGCAATTGTTATAGGCTCTGGGATTGGAGGGTTGGTTGCAGGGACCCAGCTGGCAGTGAAGGGTGGTAAAGTTTTAGTTTTGGAGAAGTATGTCATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGGGATGGCTATACTTTTGATGTGGGCTCTTCTGTCATGTTTGGTTTCAGTGATAAGGGTAATCTCAACTTGATAACACAAGCATTGGAAGCAGTTGGTTGTCAGATGGAGGTGCTACCCGATCCAACAACCGTTCATTTCCATCTACCGAACAACCTCTCTGTTCGAGTGCACAGAGAATATGATAAATTCATTGAAGAACTGACCAGTTATTTCCTCCATGAAAAGGATGGCATCCTCAAGTTCTACGGTGAATGCTGGAAGATTTTCAATGCCCTGAATTCGTTGGAATTGAAGTCACTGGAGGAGCCACTCTACCTTTTTGGACAGTTTTTTCAGAAGCCACTTGAATGCTTGACACTAGCCTATTATTTGCCTCAAAATGCTGGAGCCATCGCCCGGAAGTATATTCAGGATCCACAATTGTTGTCTTTCATAGATGCAGAGTGTTTTATAGTGAGCACCGTCAATGCTTTGCAGACTCCAATGATCAATGCTAGCATGGTTCTGTGTGATAGACACTTCGGTGGGATTAACTACCCTCTTGGGGGTGTTGGTGGGATTGCAAAGTCCTTAGCAAAAGGTCTAGTTGATCAGGGTAGTGAGATACTTTACAAGGCGAATGTCAAGAGTATTATAACCGAGCAGGGAAAAGCCGTAGGAGTGAGGCTTTCAGATGGAAGAGAGTTCTTTGCCAAAACCATAATATCAAATGCTACCAGATGGGATACATTTGGAAAGTTACTAAAGGGAGAACCACTTCCAAAAGAGGAAGAAAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAAGCTGAGGTTTTGCCGCTAGATACAGATTGTCACCATTTTGTGCTTGAGAACAACTGGACCAAATTGGAGGAGCCATATGGAAGTATCTTTCTAAGTATACCAACTGTTCTTGATTCATCATTAGCTCCTGAAGGTCATCATATCCTTCACATATTCACAACTTCTTCCATGGACGACTGGGAGGGTCTATCAAGAGTCGAATACGAGGCAAAGAAGCAGGTTGTAGCCGATGAAATCACAAGCAGATTAGAGAAGAAATTGTTTCCAGGTCTTAGATCATCCATCGATTTTATGGAGGTAGGGACACCAAAGACACACCGGCGATACCTAGCGCGTGATGAGGGTACTTACGGACCAATGCCGCGCAGCATTCCAAAGGGGTTATTGGGAATGCCATTTAATACCACAGGCATAGATGGTCTTTACTGTGTTGGTGACAGCTGCTTCCCGGGGCAAGGTGTTATTGCAGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGGGTTGGAGAAAAAGTCACCCGTTTTGGATGCCATGCTGCTTCGGTTGCTTGGTTGGCTAAGAACACTAGCATGAGATTTAACATATAGGAACACGTGTTGGTGGTGCAATATCAACTTTCATTNCATTTTTTTTTTCACAATTTTCGAAAGAGTTGGCAAGCCTGTCACAAAAAGGTAGGTGATGTGTGTTGTAATTTGATCCATGGGGTCCCTTTTTATATTTGTTTATTTTTTGTGAGGGAGGGGCTGTGAAGTGTGAAAATGTAAAGGATCTCTGTATGATCAGTTTTCTCTTATTCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00297	182359	188191	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09835	crtISO, crtH	EC:5.2.1.13	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process
GO:0016117 carotenoid biosynthetic process

molecular_function
GO:0016853 isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000297s00023404.1	PF13450.1	NAD_binding_8	107	168	4.40E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.091
SRR1783600	control	6.129
SRR1783602	moderate drought stress	5.018
SRR1811619	moderate drought stress	5.057

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.686
DRR006520	Root Summer glycyrrhizin high producing strain	8.518
DRR006521	Root Winter glycyrrhizin high producing strain	8.330
DRR006522	Root Winter glycyrrhizin high producing strain	8.207
DRR006523	Root Summer glycyrrhizin low producing strain	7.311
DRR006524	Root Summer glycyrrhizin low producing strain	7.154
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.878
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.752

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.467
SRR2868004	Drought Stress (root)	34.351
SRR2967015	Control (root)	25.612

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.019
SRR9715740	Leaf	17.461
SRR9715741	Leaf	18.648
SRR9715739	Root	2.899
SRR9715742	Root	6.668
SRR9715743	Root	4.785

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.019
SRR8749028	MeJA induced 9h	6.562
SRR8749029	MeJA induced 9h	5.149
SRR8749030	Uninduced	4.301
SRR8749031	Uninduced	1.624
SRR8749032	Uninduced	3.247

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.443
SRR8400027	Control - Root	17.460