Gene detail

Gene detail information of Glyur000297s00023393

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01818.1	1.00E-30	PLATZ transcription factor family protein
NR	XP_003529229.1	3.04E-99	PREDICTED: uncharacterized protein LOC100820425 isoform X1 [Glycine max]
trEMBL	tr\|I1KKX6\|I1KKX6_SOYBN	1.00E-99	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G27310.1}

Sequence

Transcript Sequence

>Glyur000297s00023393.1
CAATATTGGAATTTGAGTGACGAGTGAGATTGTGGGGTTGTATTATATAACTCTGTTGATGTTGATGATTGATAGATATATGCTGGTAATTTGATAAGGATATAGTGGAGAATTGATCCTTGATCATTGAACTGTGTTCATGTTTTAGCATATTCTTTTACAAAAGGTTATTGAATTTTTCTTATGGATTATGCAGATGGGGCAGTGTAGTTTACCAAATGGAAGAGAAGATTGGCTTGGTGCCCTTCTGAGGAATGGCTTTGGCTACAGTGAAAACCACCAAGATCTCAAGTGTAATGAGAGGAATGTGTTCTGCATAGACTGTGCTGTTAGTTTGTGTAGGCACGATAAGGAAGCTCATTCCCTCCATAGAAGGTTTCAGATTTACAAATATTGCTATCAGGATGTTGTTCGCCACTCTGACCTCCACAAGTATTTTGATTGCTCAAATATTCAGACTTATGTATCGAATAATGACAAGATTGTGCATCTCAAGCCCCGGCCTTCAACCAAAGAGATGAAGCTAGCAAAAAGTTCTAAATTTGTTACTCAAGCCAAAGAAACAAAAACATCACCAACACCTCCAAAGTCAGGTGGTGGTACTTGTGAAGAATGTGGAAAACATTTACAAGATAAGAAGAATCGATTCTGCTCCATCACATGCAAGATCTCAGTGCTTCCNGGGGAGCTCCAAAAGGGAATAGCAGAACATTCACAAAGGACTTCAGAGGAGCCTCTCAACCAAAATGAGAACCAAAATTCAGAAGCTGAGTCATCTATCTCTGTAGCTGAACCATATGAATGTGTTGAAAAAGTGAACTTCAGAAAGCGACCAAGGAAAAACACCCCTCAGAGATCTCTCTCTGGTTACCCATCTTGAAAATTGTCTTCTTTTTTTTCCTCTTCTGATTCTTTTTCTTTTGTTCCCATTTTTTGGAGAATAAGATTTATTGGAACATGTGATTGAAACTCAAGCCTACTCGCTATACAATATAAAGGGATTCAATGTGTAAGTTGAGAGTTTGAGGTTCAATAGCTGTGAAATAAGTAGCTTGCTGAGCTTGTACAGCACAAGGGTGATATGATAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00297	102496	104274	+

Gene family

Gene family	subfamily
Transcription Factors Family	PLATZ

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000297s00023393.1	PF04640.9	PLATZ	67	160	3.10E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.421
SRR1783600	control	3.468
SRR1783602	moderate drought stress	1.901
SRR1811619	moderate drought stress	1.948

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.087
DRR006520	Root Summer glycyrrhizin high producing strain	6.046
DRR006521	Root Winter glycyrrhizin high producing strain	0.806
DRR006522	Root Winter glycyrrhizin high producing strain	0.699
DRR006523	Root Summer glycyrrhizin low producing strain	1.817
DRR006524	Root Summer glycyrrhizin low producing strain	1.820
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.615
SRR2868004	Drought Stress (root)	0.859
SRR2967015	Control (root)	0.522

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.123
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.371
SRR9715742	Root	0.453
SRR9715743	Root	0.665

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.130
SRR8749028	MeJA induced 9h	0.397
SRR8749029	MeJA induced 9h	0.559
SRR8749030	Uninduced	0.467
SRR8749031	Uninduced	0.492
SRR8749032	Uninduced	0.209

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.900
SRR8400027	Control - Root	12.925