Gene detail

Gene detail information of Glyur000297s00023392

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G32450.1	5.00E-49	RNA binding (RRM/RBD/RNP motifs) family protein
NR	CAN70144.1	1.07E-122	hypothetical protein VITISV_029929 [Vitis vinifera]
trEMBL	tr\|A5BGE0\|A5BGE0_VITVI	4.00E-123	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN70144.1}

Sequence

Transcript Sequence

>Glyur000297s00023392.1
CACATTCCCCTCAAATACGGAGTGACAGATCCACAAAACGAAGCAAAACGCGGTTCCGTTTGTGAAATGACGGAACTACCCCTTACCATTCCGCTCCTTTCAAAAAGACAAAAACTACCCCTGTTTGTGACAAACCCTCACAAACAACAACATTGTATCATCCGAAAAAATGTCGACCTCCCCAGTGAACCATATGGATGATGAAAGAGTTGAAGCGATTCCGCACTCTACAGCTACACCAAATTGGACTGTCCATGTTTCAGATATAAGAACAGTTAAGGTCAATAACATATCACTAATTACTTCCAAGAAGGACATTGAAGAATTCTTTTCATTCTCAGGCGATATTCAATATATTGAGATGCAAAGGGAAACTGATCGCACCCAGGTTGCTTACGTTACCTTTAAGAATTCACAGGGAGCTGAGACAGCAGTTCTCTTGACAGGTTCTAAGATATCTGACCTATATGTCACCATCACACCTGTGGAGAAGTACCAGCTTCCCCCTGATGCTCTTCCCTCAAGTCCAGTGCTTGAGCTCCGCGTGAACAGATCGGAGCTGCTGGCAGGCGACGGCGGGTGGAGGGAGCGACGCCTGGTGTACCTCCGATCTGTTGCTTTGTTCGCTGCTGGGCTGGCTGTTCGCTGGAGATTGAGAAAGAAAGGGGCTTCGGTAACTAAATGGCTACATTCTGGGGTGTTGTATCTGGTGCTCAATTTCTCTAATGTCCAATGCTCTTCTCAACAGACCAACCAAAGTGCTGCTGCAGTTAAGAAGGCTGAAGATGTAATAAGCACCATGCTTGCCAAAGGTTTCATTTTAGGAAAGGATGCAATCAACAAGACAAGAGCCTTTGACGAACGTCATCATTTGACCTCAAATGCTTCTTCCACAGTCGCTTCCATTGACCGTAGAATGGGTATAAGTGATAAACTAAGTATTGGAACAACCATTGTCAANGAAAAGGTGAGGGAGATGGATGAAAGGTTTCAGCTGTCTGAAATGACAAAGTCTGCTATTGCTGTTGCCGAGCAAAAGGCAAGTAGTGCCGGATCTGTTATCATGAGCAATCCTTACGTATTAACCGGAGCTTCATGGATGTCAAGTGCCTTCAGTGCTATTGCAAAGGCAGCGGAGGATGTCNGCATGAAGACGAAGGAGAAGGTTGAACANGCTGAGGTGGAAAAGAAGGAGATCGTTGATGGATTTTNACAGATGCACTTCGAGGAGTCTTCAGACAGGGGCCCTGCAGTAGTTCCTATTAATTCAGATAATGACAGTAAACCAGGGAATTATATAACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00297	85690	90373	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000297s00023392.1	PF00076.17	RRM_1	38	98	1.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.449
SRR1783600	control	21.440
SRR1783602	moderate drought stress	12.367
SRR1811619	moderate drought stress	12.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.124
DRR006520	Root Summer glycyrrhizin high producing strain	41.549
DRR006521	Root Winter glycyrrhizin high producing strain	119.749
DRR006522	Root Winter glycyrrhizin high producing strain	115.912
DRR006523	Root Summer glycyrrhizin low producing strain	61.540
DRR006524	Root Summer glycyrrhizin low producing strain	62.240
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.066
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.890

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.437
SRR2868004	Drought Stress (root)	90.480
SRR2967015	Control (root)	97.288

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.426
SRR9715740	Leaf	12.474
SRR9715741	Leaf	12.307
SRR9715739	Root	4.348
SRR9715742	Root	29.274
SRR9715743	Root	24.239

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	143.794
SRR8749028	MeJA induced 9h	148.934
SRR8749029	MeJA induced 9h	199.035
SRR8749030	Uninduced	158.129
SRR8749031	Uninduced	119.260
SRR8749032	Uninduced	149.046

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.738
SRR8400027	Control - Root	62.855