Gene detail

Gene detail information of Glyur000297s00023388.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68020.2	0	UDP-Glycosyltransferase / trehalose-phosphatase family protein
NR	XP_003529226.1	0	PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6-like [Glycine max]
COG	YP_006545085.1	1.00E-134	alpha,alpha-trehalose-phosphate synthase (UDP-forming) [Methanoculleus bourgensis MS2]
Swissprot	tr\|Q94AH8\|TPS6_ARATH	0	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
trEMBL	tr\|K7L2B3\|K7L2B3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G26980.2}

Sequence

Transcript Sequence

>Glyur000297s00023388.1
TGCCGTATCAGCAGATATTATTATGGGGTTGGATGGCCATAGTGATCAAGGAGAAACCTCCACCGAATGAAAATTCAAGTCTTTCTTTTAATTAGAAAACGTTCATGTTAAAATCTTTCTTTTTNATATTTTCCTTATTCTTCTTCCTCTCCACTATATAGAGTTTGAGTTTTTTCTCAAACCCAATTTTATTTTTTCCCATCCACCCAATCAAAGTAAAATTGGAATTCAAGTCTCAAACAAACTGATTCNCCACCTGCATCTCTTGCCACTTCATGCTTTGTAACTTCTCATTNACTCAATTCAGGACTAGTATTAGCTGACCCAGCTCTCAAATCACAGTCTTTGTTCACTTCGCACTCTTATAGTTGATTTTGGACTTACCCTTCAGGTTAAACGGGTTGTGGACCTTGATACTGTGATATTGAGTTTAGAGAATTACCTTGGTGGGACTTGTATGGTATGTGGGTGTAATACTATAGTGTTTCAAAAGCATTTGTGTGTATATTAGGTTGTTGGGAATTACCAGAAAATGGTGTCAAGATCCTATTCAAATCTATTAGAGTTGGCCTCTGGGGAGGCTCCATCATTTGGGTTAATGGACAGGAGAATTCCAAGGATTATGACTGTGGCTGGGTTGATATCTGATGTTGATGATGACCCAGTGGAGAGTGTGTGTTCTGATCTGTCTTCTTCGTCGGTGCACCGAGACCGGATCATAATAGTGGCCAATCAGCTCCCTATAAAGGCCCAGAGGAAGTTAGATGGTAATAGGGGTATTTGGTCTTTTGATTGGGATGAGAATTCACTTCTTCAATTGAAAGATGGATTAGGGGATGATGATATTGAGGTTATCTATGTTGGTTGCCTTAAGGAAGATGTGCATCCAAGTGAACAGGATGAGGTTTCACAGATACTTCTTGAGAGTTACAAGTGTGTTCCAACTTTTCTCCCACCTGAGATGTTTACTAGGTACTATCATGGGTTTTGCAAACAACAGTTATGGCCACTGTTTCATTACATGTTGCCTCTGTCACCGGAACATGGTGGTAGGTTTAATAGGTNGCTGTGGCAGGCTTATGTCTCGGTCAATAAGATCTTCGCGGATAGGATCATGGAAGTTATTAACCCTGAGGATGATTATGTGTGGATACATGATTACCATCTGATGGTGTTACCAACTTTCTTGAGGAAGAGATTCAACAGGGTGAAACTGGGGTTCTTCCTCCATAGCCCGTTCCCTTCATCGGAAATATACAAGACATTGCCCATTAGGGAAGAGCTCTTGAGAGCACTCCTTAATTCAGATTTGATTGGGTTCCACACTTTCGATTATGCACGGCACTTCCTCTCCTGTTGTAGTCGGATGCTCGGTCTCACCTATGAGTCCAAGCGAGGTTATATCGGGATCGAGTATTATGGGAGGACTGTTAGTATCAAGATTCTTCCTGTTGGTATACACATGGGTCAGCTTCAATCAGTTTTAAGGATGCCGGAGACTGAAGAAAAAGTTTGCGAGCTCATTAGACGGTTTTCTGATCAAGGAAGGACGATGTTGCTTGGGGTGGATGACATGGATATTTTTAAGGGAATAAGTTTGAAGCTATTGGCAATGGAGCAGCTTCTCATTCAGCACCCTGAGTATCAGGGAAAGGTAGTACTGGTCCAGATAGCTAATCCTGCCAGGGGACGAGGGAAGGATGTGAAAGAAGTGCAAGCTGAGACAAAGGCCACGGTGAAACGGATCAATGAGACATTTGGGAAACCCGGGTATGATCCTATTATTCTGATTGAGGAGCCACTCAAGTTTTATGAGAGAATCGCTTACTATGTTGTTGCCGAGTGTTGTTTAGTCACCGCAGTAAGGGATGGAATGAATCTCATACCGTATGAATATGTAGTTAGTCGTCAAGGAAACGAAACACTGGATAAAGTTTTGGGGATAGCTACCTCCCCTAAGAAAAAAAGCATGTTAGTTGTGTCTGAGTTCATTGGCTGTTCCCCATCTTTAAGCGGAGCAATCAGGGTGAACCCATGGAATATTGATGCAGTGGCAGATGCAATGGACTCTGCCCTGGAAATGGCTGATTCAGAAAAACAGCTTAGGCATGAAAAGCATTATAGATATGTTAGTACGCATGACGTTGGGTACTGGGCTCGAAGCTTCTTACAAGATTTGGGGAGGACTTGTAGCGATCATGTACGACGAAGGTGGTGGGGAATTGGGTTTGGATTGAGTTTTAAAGTTGTAGCACTTGATCCAAACTTTAGAAAGCTCTCAATGGAGCACATAGTTTCAGCTTACAAGCGGACAACAACTCGGGCGATCCTTCTAGACTATGATGGTACACTAATGCCTCAGGCTTCCATTGATAAGAGCCCAACCAGTAAATCCATTGAAATTCTCAATAGTTTGTGTCGAGATGAGAACAACATGGTGTTTCTGGTTAGTGCTAGAAGCCGNAAGACACTTTCTGAATGGTTTTCTCCTTGTGAGAATCTTGGAATTGCAGCTGAGCATGGTTACTTTCTAAGAATGAAGCGAGATGACGAATGGGAAGCCTGTGTTCCTGCAACAGATTTTAGTTGGAAACAAATTGCAGAGCCTGTGATGAAACTTTACACTGAAACAACCGATGGATCCACCATTGAAGATAAGGAGACTGCGCTTGTTTGGTGCTATGAGGATGCAGATCCAGATTTTGGATCATGCCAAGCTAAGGAACTTCTTGATCATCTCGAGAGTGTGCTNACAAATGAACCAGTAACAGTCAAAAGTGACCAGAATAATGTAGAGGTTAAACCACAGGGTGTGAGCAAGGGACTAGTGGCCAAACGCCTACTTTCCGCCATGCAAGAAAAGGAAATGTCACCTGATTTTGTTTTGTGCATAGGAGATGACAGGTCTGATGAAGACATGTTCGAGGTAATCACCAGTTCGATGAACGGTCCAATAGCACCGAGGGCCGAAGTATTTGCATGCACTGTTTGTCAGAANCCAAGTAAGGCTAAGTACTATCTAGATGATACAGCTGAAATAGTTAGATTGATTCAGGGTTTAGCCTGCGTTTCGGAACAAAAAGTATCGCGTTAAGCTCGGGAAAGTTGGCGGCGAAAGGTATTGTGCTTGCCTTTTGTTTGTCATTGAGCATGTAGGCTCAGGTGTGTTCTCCATAATATATACAGTCTTTTATTGTTTTTTGGATATTCCATGTAAAGTATTGTAGTTGTTACTGAGAGAAGTTCTGCATCGGATTCTGCTCCTTAGATGTTTGATTTCTATCAGGGAAACTTGTACATATATTTGGTTTTCATTTTTCAGACATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00297	56070	60352	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT20

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16055	TPS	EC:2.4.1.15 3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000297s00023388.1	PF00982.16	Glyco_transf_20	61	549	3.30E-182
Glyur000297s00023388.1	PF02358.11	Trehalose_PPase	600	833	3.70E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.625
SRR1783600	control	29.992
SRR1783602	moderate drought stress	43.007
SRR1811619	moderate drought stress	42.862

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.547
DRR006520	Root Summer glycyrrhizin high producing strain	50.914
DRR006521	Root Winter glycyrrhizin high producing strain	91.047
DRR006522	Root Winter glycyrrhizin high producing strain	88.919
DRR006523	Root Summer glycyrrhizin low producing strain	77.153
DRR006524	Root Summer glycyrrhizin low producing strain	76.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.886
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.091

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	58.146
SRR2868004	Drought Stress (root)	96.848
SRR2967015	Control (root)	148.801

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.783
SRR9715740	Leaf	55.816
SRR9715741	Leaf	65.539
SRR9715739	Root	37.047
SRR9715742	Root	75.447
SRR9715743	Root	72.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.241
SRR8749028	MeJA induced 9h	125.876
SRR8749029	MeJA induced 9h	73.901
SRR8749030	Uninduced	37.437
SRR8749031	Uninduced	84.911
SRR8749032	Uninduced	49.378

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.920
SRR8400027	Control - Root	49.859