Gene detail information of Glyur000297s00023387 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55140.1 | 7.00E-34 | ribosomal protein L30 family protein |
| NR | AFK34998.1 | 2.12E-69 | unknown [Lotus japonicus] |
| COG | NP_375345.1 | 3.00E-06 | 50S ribosomal protein L30 [Staphylococcus aureus subsp. aureus N315] |
| trEMBL | tr|I3S406|I3S406_LOTJA | 8.00E-70 | Uncharacterized protein {ECO:0000313|EMBL:AFK34998.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00297 | 50396 | 52540 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000297s00023387.1 | PF00327.15 | Ribosomal_L30 | 50 | 100 | 1.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.576 |
| SRR1783600 | control | 11.794 |
| SRR1783602 | moderate drought stress | 12.034 |
| SRR1811619 | moderate drought stress | 12.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.147 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.416 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.758 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.796 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.430 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.995 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.875 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.381 |
| SRR2868004 | Drought Stress (root) | 9.859 |
| SRR2967015 | Control (root) | 10.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.095 |
| SRR9715740 | Leaf | 5.044 |
| SRR9715741 | Leaf | 5.669 |
| SRR9715739 | Root | 13.322 |
| SRR9715742 | Root | 9.255 |
| SRR9715743 | Root | 9.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.072 |
| SRR8749028 | MeJA induced 9h | 13.420 |
| SRR8749029 | MeJA induced 9h | 25.218 |
| SRR8749030 | Uninduced | 3.423 |
| SRR8749031 | Uninduced | 1.332 |
| SRR8749032 | Uninduced | 5.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.748 |
| SRR8400027 | Control - Root | 16.858 |