Gene detail

Gene detail information of Glyur000297s00023382

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G14790.1	RNA-dependent RNA polymerase 1
NR	XP_004498236.1	PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LQV2\|RDR1_ARATH	RNA-dependent RNA polymerase 1
trEMBL	tr\|K7K760\|K7K760_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G09470.3}

Sequence

Transcript Sequence

>Glyur000297s00023382.1
ATGTATGATCATATATTAAGTGAATGCAANTCAAATAATCCACCTCGGTCACCTATGATATCCTTGGATACAGGGTTGGTATATGTACGCAGGGTTCAGATTACACCATGCAAAGTATACTTTAGTGGTCCAGAGATTAATGTCTCAAACCGCGTTCTCCGCCATTTCAATGAGCATATCAATAACTTTCTACGTGTTTCATTTGTTGATGAGGAGTTGGATAAACTGTATTCAACAGATTTATCTTCACGTTCTGATGGCAGCAAAACTGAGATATACAATAGAGTTCTTTCCATCCTGAGAAATGGCATAATTATTGGTGATAAGAAGTTTGAATTTCTGGCATTCTCATCGAGTCAGTTGCGGGAAAATTCTCTCTGGATGTTTGCTCCTACAACAACTGGATGTACTGCCGCTCACATAAGGGAATGGATGGGAGATTTTNGCANGATAAGAAATGTGGCTAAATATGCGGCTAGGCTGGGACAATCTTTTGGTTCATCTACTGAAACTCTAAGTGTCAACAGGAGTGAAATTGAAATTATTCCTGATGTGACGTTTAAACATGGTGGAATAGAATATGTCTTTTCTGATGGAATTGGGAAAATATCTCTTGATTTTGCCAGGAAAGTGGCTAAAAAATGTGGTCATAATTCTACACCATCGGCCTTTCAGATTCGGTATGCCGGGTACAAAGGAGTTGTGGCTGTTGACCCAACCTCATCTGTGAAGTTATCACTGAGGAAGAGCATGCACAAATATGATTCAGATAACACCAAATTGGATGTTTTAGCATGTAGTAAGATCCAGGCTTGTTATCTGAATCGACAGTTGATTACTCTCCTATCCACTCTTGGTGTCAGGGACAGTGTTTTTGAGAAAAAACAAGGAGAAGCTGTTGATCAACTGAACACTATGCTAACAGATTCATTAAAGGCACAAGAGGCTTTGGACTTAATGTCTGCTGGGGAGATCACTAATATTCTGAAGGAGATGCTCATTTGTGGTTACAAGCCTAATGTTGAACCATTTCTTTCAATGATGCTGCAAACATTTAGGGCATCAAAACTGCTGGATTTGCGGCAAAAAACTAGGATAGTTATTCCAATGGGAAGAGCAATGATGGGATGCTTAGATGAAACTAGAACCCTAGAATATGGTCAAGTTTTTGTTCATTTTTCTAAAAATGAGTCCGGGAGGAGTCTTTCAAAATCTTATATAGTTACAGGTAAGGTAGTAGTAGCAAAAAACCCCTGCTTGTACCCAGGTGATGTGCGTGTTTTGAAGGCTGTGAATGTGCCAGCTTTGCACCATATGGTGGATTGTGTTGTTTTTCCTCAAAAAGGTTTCAGACCACATACAAATGAATGTTCGGGGAGTGATCTGGATGGGGACATTTACTTTGTTTGTTGGGATCCTGAATTGATTCCACATAAAACAATCGAACCAATGGACTATACTCCTGCCCCAACTACACAATTGGATCATGACGTGATGATTGAGGAGGTGGAGGAGTATTTTACCAATTACATACTCAATGACAGTCTGGGAATAATTGCCAATGCACACACTGTCTTTGCAGATAGAGAATCTGAAAAGGCAATGTCTGAGNATTTGTATTATTATTATTTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00297	23809	27442	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003968 RNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000297s00023382.1	PF05183.7	RdRP	37	536	5.50E-178

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.423
SRR1783600	control	29.798
SRR1783602	moderate drought stress	20.950
SRR1811619	moderate drought stress	21.239

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.700
DRR006520	Root Summer glycyrrhizin high producing strain	65.366
DRR006521	Root Winter glycyrrhizin high producing strain	2.707
DRR006522	Root Winter glycyrrhizin high producing strain	2.329
DRR006523	Root Summer glycyrrhizin low producing strain	80.461
DRR006524	Root Summer glycyrrhizin low producing strain	80.952
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.709
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.885

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.528
SRR2868004	Drought Stress (root)	33.658
SRR2967015	Control (root)	42.280

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.446
SRR9715740	Leaf	6.756
SRR9715741	Leaf	8.966
SRR9715739	Root	11.427
SRR9715742	Root	60.748
SRR9715743	Root	50.781

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.010
SRR8749028	MeJA induced 9h	4.195
SRR8749029	MeJA induced 9h	2.222
SRR8749030	Uninduced	0.476
SRR8749031	Uninduced	0.117
SRR8749032	Uninduced	0.351

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.685
SRR8400027	Control - Root	31.037