Gene detail information of Glyur000297s00023380 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14790.1 | 2.00E-63 | RNA-dependent RNA polymerase 1 |
| NR | KEH40644.1 | 5.05E-109 | RNA-directed RNA polymerase [Medicago truncatula] |
| Swissprot | tr|Q9LQV2|RDR1_ARATH | 5.00E-72 | RNA-dependent RNA polymerase 1 |
| trEMBL | tr|A0A072VF31|A0A072VF31_MEDTR | 2.00E-109 | RNA-directed RNA polymerase {ECO:0000313|EMBL:KEH40644.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00297 | 6839 | 9615 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.553 |
| SRR1783600 | control | 10.303 |
| SRR1783602 | moderate drought stress | 7.715 |
| SRR1811619 | moderate drought stress | 8.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.933 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.854 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.959 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.761 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.200 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.112 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.664 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.996 |
| SRR2868004 | Drought Stress (root) | 42.380 |
| SRR2967015 | Control (root) | 53.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.999 |
| SRR9715740 | Leaf | 4.209 |
| SRR9715741 | Leaf | 4.367 |
| SRR9715739 | Root | 7.436 |
| SRR9715742 | Root | 59.662 |
| SRR9715743 | Root | 50.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.619 |
| SRR8749028 | MeJA induced 9h | 2.696 |
| SRR8749029 | MeJA induced 9h | 0.649 |
| SRR8749030 | Uninduced | 0.131 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.484 |
| SRR8400027 | Control - Root | 36.285 |