Gene detail information of Glyur000296s00018771 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25690.3 | 2.00E-97 | Hydroxyproline-rich glycoprotein family protein |
| NR | XP_007161008.1 | 0 | hypothetical protein PHAVU_001G035200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LI74|CHUP1_ARATH | 8.00E-107 | Protein CHUP1, chloroplastic |
| trEMBL | tr|V7CS35|V7CS35_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW33002.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00296 | 188492 | 192910 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.751 |
| SRR1783600 | control | 0.672 |
| SRR1783602 | moderate drought stress | 0.557 |
| SRR1811619 | moderate drought stress | 0.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.702 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.731 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.046 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.045 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.205 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.205 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.229 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.505 |
| SRR2868004 | Drought Stress (root) | 1.215 |
| SRR2967015 | Control (root) | 1.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.923 |
| SRR9715740 | Leaf | 0.312 |
| SRR9715741 | Leaf | 0.128 |
| SRR9715739 | Root | 0.051 |
| SRR9715742 | Root | 0.398 |
| SRR9715743 | Root | 0.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.560 |
| SRR8749028 | MeJA induced 9h | 4.587 |
| SRR8749029 | MeJA induced 9h | 2.158 |
| SRR8749030 | Uninduced | 0.114 |
| SRR8749031 | Uninduced | 0.211 |
| SRR8749032 | Uninduced | 0.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.820 |
| SRR8400027 | Control - Root | 1.924 |