Gene detail

Gene detail information of Glyur000296s00018762

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10970.1	2.00E-108	zinc transporter 4 precursor
NR	XP_004498889.1	1.06E-169	PREDICTED: zinc transporter 4, chloroplastic-like [Cicer arietinum]
COG	YP_007467549.1	2.00E-13	putative divalent heavy-metal cations transporter [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|O04089\|ZIP4_ARATH	3.00E-144	Zinc transporter 4, chloroplastic (Precursor)
trEMBL	tr\|Q6VM17\|Q6VM17_MEDTR	2.00E-162	ZIP zinc/iron transport family protein {ECO:0000313\|EMBL:AES59240.1}

Sequence

Transcript Sequence

>Glyur000296s00018762.1
TTTTCACCACATGCCCCATGTTCCTGTTTCATCGCGTCCCCAATCCCAATCATCACCTTTTAATTTCTCCTTTTCCTGAAAACCCAGATTCGTGTTCACCCACACCACTCTCTATATATATAAGTACCACTAAACCCTACCCACACACACACGCATTCCTCTTTTTCCTTTGACTCCTCAATTTTATTATTACACCCTATACTATCTGTTTCCTCCTTCCCATGTTTCTAATCGAGGTTTCTTTTTCTTGTCTTATATATATTGTATAGATAACTAAACTAAACTAAACTAAACTAAACTAATCTCCCTCTCTTCTCCCAATGAACTCTTTTAATCCTTATTTTCTTCGAAAATTGTCAATTTTCTCTCAATTTTTCATTTTCAGGATTTCTGGCCACTGCTCCACCTCGACCATGCCGTCGCTAAAACTCGTCTCTTTTCAGAATCGCTTCTGGAATCTCTACGCGAATACACGACGAACCCGAGTTGCGAAGACAGTGACTCGGCAGAGCTGTGTCGCGACGAGTCAACGGCGTTCGCGTTGAAATTCGTGGCGATGGCGTCGATTCTGGTGGCGGGGTTTGGGGGAATCGCGATACCGCTGCTGGGGAAACAGCGGCAATTATTGCGCGGCGACGGGGAGGTTTTAGCGGCGGCGAAGGCGTTTGCGGCGGGTGTGATACTCGCGACGGGGTTCGTTCACATGCTGAAGGACTCGTGGGAGGCACTGAACCACCCTTGCCTAAGATCGTACACGTGGTTGAAGTTTCCTTTTACCGGGTTCTTCGCTATGATGTCGGCGCTCTTCACACTCCTTGTTGAGTTTGTTGGAACACAGTACTACGAGCGAAGACAGGGACAGGNTAAGGGGCTACCTCGTGCTAACGCCGCGGAACACGGAAAGGTTGTTATTGTTGGTGGTGGTGGTGGTGATGATGACGTGGAGGAGGAGTTGTTGGGGACGGNAATCGTGGAGGTTAAGGAGGTTGTGAAGAAGGTGTTTGGAGAAGAGAACAGTGGTGGAACTGGAATTGGAATGCATATCGTGGGGATGCATGCTCACGCGGCGCACCATAGTCACTCCCACCACGAACTCCAACATGGTGGAGGACACTCTNACTCTCACTCCTTCGGTGCCCCTCATGACATGGAAACCGGCGTCCGCCACGTCGTCGTTTCGCAGGTATTGGAACTTGGGATTGTTTCACATTCCATGATAATTGGGTTATCCCTAGGAGTATCACAAAGCCCATGTACCATGAGACCCCTAATTGCGGCATTATCCTTCCATCAATTCTTTGAAGGCTTTGCACTTGGTAGTTGCATCTCGGAAGCCCAATTCAAGACCTCATCGGCAACAATAATGGCTTGCTTTTTTGCACTTACAACACCACTTGGTGTTGCCATTGGGACTGCTATTGCCTCTAATTTCAACCCTTATAGTCCAGGAGCACTCATCACTGAAGGCATCTTGGACTCATTCTCAGCTGGGATTTTAGTGTATATGGCTTTAGTGGATTTAATTGCTGCTGATTTTCTTAGCAATAGAATGCGTTGTAACTTTAGGCTGCAGATAATGTCTTATTGTTTGCTTTTCCTTGGGGCTGGATTGATGTCCTNGCTCGCAATTTGGGCATGATCCTTTTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00296	141359	145187	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

GO:0071577 zinc II ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005385 zinc ion transmembrane transporter activity

GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000296s00018762.1	PF02535.17	Zip	1	357	2.40E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.480
SRR1783600	control	4.259
SRR1783602	moderate drought stress	5.403
SRR1811619	moderate drought stress	5.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.391
DRR006520	Root Summer glycyrrhizin high producing strain	7.273
DRR006521	Root Winter glycyrrhizin high producing strain	2.169
DRR006522	Root Winter glycyrrhizin high producing strain	2.345
DRR006523	Root Summer glycyrrhizin low producing strain	11.759
DRR006524	Root Summer glycyrrhizin low producing strain	10.837
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.471
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.408

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	81.250
SRR2868004	Drought Stress (root)	82.306
SRR2967015	Control (root)	80.040

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.199
SRR9715740	Leaf	11.250
SRR9715741	Leaf	12.360
SRR9715739	Root	10.008
SRR9715742	Root	12.010
SRR9715743	Root	11.083

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.094
SRR8749028	MeJA induced 9h	6.015
SRR8749029	MeJA induced 9h	7.979
SRR8749030	Uninduced	5.080
SRR8749031	Uninduced	3.825
SRR8749032	Uninduced	3.706

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.429
SRR8400027	Control - Root	23.159