Gene detail

Gene detail information of Glyur000296s00018758

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11870.2	7.00E-75	Alkaline phytoceramidase (aPHC)
NR	XP_004498885.1	1.45E-142	PREDICTED: uncharacterized protein LOC101503202 isoform X2 [Cicer arietinum]
trEMBL	tr\|G7I9X5\|G7I9X5_MEDTR	4.00E-140	Alkaline phytoceramidase (APHC) {ECO:0000313\|EMBL:AES59236.1}

Sequence

Transcript Sequence

>Glyur000296s00018758.1
CGAGGTTGTCATTTTCCGGATCAATNAGTGTTTCTCTTGGGCCATGGCTCCATACACACACGTTATGAAAGGAGTGCTTTTTAATGAAGCTCCAAAAACGAAAGAAAGAGTGATCGTAGTGATGGGTTGGACTTGGACTTGGGTGGCAAACCAACAACAACAACAACAACAACAACAACAGTTGAGAAGAAGATGCAAGAGAACTCGTGTTTTGGGAGTAGCTGCATTCCTCTTCTCTATCTCCTTCTTTCTCTTCACTCCCAAAATTCCTCACTCTCCCAACCACCACCGTTTCGCTGACTTGCGCAATTTTCTTGGTGTCCCCAACACGTTGAATGTGATCACGAATTTTCCATTTTTGGTTGTGGGTGTTCTGGGTTTAGTTCTCACTCTCGAGCGAGGTTTTTTCAACACGAGTTCTCAAGCAGAGGCATGGGCTTGGGCACTATTCTATGCTGGAGTTACAGGGGTGGCTTTTGGCTCTGCTTATTATCATTTGAAGCCTGATAACAACAGGGTGTTGTGGGACACTTTACCGATGATGGTGGCATACTCCTCGCTTTTCTCTAGTTTGGTTGTTGAGAGAATTGGCCACCGGATTGGGTTGTGTTGCATGTTTTCACTCCTTTTGGCTGCCTTTATTTGTGTAGTTTATGAACGAATTTATGATGATATTCGGCTCTGCTTGATGTTCCAGTCAATTCTTCCTCTAGCTATTGCAATAGTAGCTTTTGTGTATCGCTCCAACTATACTCACTCAAGATATTGGTTTTCATCAATAGGGATTTATCTGCTTGCAAAATTTGAAGCTGTTGCTGACAGGAAACTCTACCGTGTAAATGACTACATCATCAGTGGGCACTCGTTGGAACACTTGTGCTTAGCACTTATCCCATGTTTACTCAGTGTAATGCTCATCTACAGGGAACGCAAGTTTCAAAGATTAGGTGATCTTAAAGATCGGCTCTGAAGAGAAGAATTGACAAAGGCGGTTATGTGTGTGCAATTACTCTTTGATACCTGAGATGTTGTGGTAAAATCAACAGTGAATGAAAACAACACCAAATAATTTTGAGTCATGTTAGATAACTTGTTGGGCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00296	114808	118381	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006672 ceramide metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000296s00018758.1	PF05875.7	Ceramidase	96	236	4.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.981
SRR1783600	control	1.995
SRR1783602	moderate drought stress	2.341
SRR1811619	moderate drought stress	2.286

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.718
DRR006520	Root Summer glycyrrhizin high producing strain	10.810
DRR006521	Root Winter glycyrrhizin high producing strain	4.579
DRR006522	Root Winter glycyrrhizin high producing strain	4.537
DRR006523	Root Summer glycyrrhizin low producing strain	13.845
DRR006524	Root Summer glycyrrhizin low producing strain	13.842
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.506
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.515

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.276
SRR2868004	Drought Stress (root)	4.019
SRR2967015	Control (root)	4.581

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.794
SRR9715740	Leaf	0.453
SRR9715741	Leaf	0.773
SRR9715739	Root	1.356
SRR9715742	Root	3.634
SRR9715743	Root	3.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.251
SRR8749028	MeJA induced 9h	9.492
SRR8749029	MeJA induced 9h	12.544
SRR8749030	Uninduced	6.929
SRR8749031	Uninduced	3.894
SRR8749032	Uninduced	3.965

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.056
SRR8400027	Control - Root	3.433