Gene detail

Gene detail information of Glyur000296s00018756

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46210.1	6.00E-174	Fatty acid/sphingolipid desaturase
NR	XP_003588984.1	0	Delta-6-desaturase [Medicago truncatula]
COG	YP_002880693.1	6.00E-39	fatty acid desaturase [Beutenbergia cavernae DSM 12333]
Swissprot	tr\|Q43469\|SLD1_HELAN	0	Delta(8)-fatty-acid desaturase
trEMBL	tr\|G7I9X4\|G7I9X4_MEDTR	0	Fatty acid/sphingolipid desaturase {ECO:0000313\|EMBL:AES59235.1}

Sequence

Transcript Sequence

>Glyur000296s00018756.1
AAAAAAATCAGTGGCTGGCTACAAAAGCTAACCACAGAGAAAGCAGCAAAACACAATCCTCAATTCACAGTCACAGCACACAACACAAACACTCACTCCACAGTCACACCCTTCTCTCTGTAATCCACAATGGTGGCTGAAACAACAACAGAAGAAGCAGCAGCAGCATTGTTGGGAACAACAACAGCAACAACAACCACCTACATTACGCTGGAAGAGCTGGGGCGTCACAACAAGCGCGGCGACGCATGGATCGCAATCGACGGCAAGATCTACGACGTTTCAAAGTGGTCCCTCCACCATCCCGGCGGCGAGCAACCACTCCTCAACCTCGCCGGCCAAGACGTCACCGATGCATTCCTCGCCTTTCACCCCGACACCGCCCACCGCCACCTCCACCACTTCTTCACCGGCCACCACCTCAAAGACTACTCCGTCTCCGATGTCTCCCGCGACTACCGTACCCTCTTCTCCCAACTCTCCAAAATGGGCCTCTTTAAACAAAAGGGACACGTCACCCTCGTACTGCTCTCCCTCATCGTCGTTATGTTCTGCGCCAGTGTTTCCGGTGTCTTGTTCTCCGACAGCACGTGCGTGCACGTGTGCAGCGGTGCGCTAATGGGCTTTTTATGGATCCAGAGTGGGTGGATTGGGCATGACTCTGGCCACTACCAGGTCATGGTGAACCGTGGCTTCAACCGGTTCATTCAGATCCTCTCTGGTAACTGTCTCGCTGGGATCAGCATTGAGTGGTGGAAGTGGAACCACAACGCACACCACATTGCTTGTAACAGCCTTGACTTTGACCCTGACCTTCAGCACTTGCCATTCTTCGTTGTCTCTTCAAGGTTCTTTGGCTCACTCACTTCTTGCTTCTATGGTAGAAAGATGAACTTTGACTCCTTTGCTAGGTTTCTGGTTAGTTACCAGCATTGGACTTTTTACCCTGTGATGTGCTTTGCTAGGATCAACTTGTTTGCACAGTCTTTCATGTTGCTGTTTTCAAATAGGAAGGTTCCCAATAGAGGGATGGAGCTTCTGGGGTTGCTTGTGTTTTGGGTTTGGTACCCTTTGCTTGTTTCTTGCTTGCCCAATTGGGGTGAGAGGTTAATGTTTGTCCTTGCTAGCTTCTCTGTCACTGGGATTCAGCATGTTCAGTTCACTCTGAACCATTTCTCTTCAAGTGTTTATGTTGGTCCACCAACTGCACATGATTGGTTTGAGAAGCAGACCAATGGGACTCTTGATGTCAAGTGTTCTGCTTGGATGGATTGGTTCCATGGTGGCTTGCAGTTTCAGGTGGAACACCATCTGTTCCCCCGGCTGCCACGGTGCCAGCTCAGGAAGATTGCGCCTCTCGTCAGGGATCTATGCAAGAAGCACAACCTTCCTTACAATTGTGTCTCCTTCTGGAAGGCCAATGTGCTGACAATTCGGACACTGAGGAATGCCGCCTTGCAGGCTCGCGATCTCACTAAGCCGGTTCCGAGAAACTTGGTTTGGGAAGCTGTTAATACTCATGGATGAAGTGGAACTTGAGTGGAGCTTCATGAGATTTTGCTGTCATCATTGACCAATATTTGATATCTGAGGGTGGTAATCCTTGGTGTTGAAGAAAGAATAATTGATTTGCAAATTGCTTAGAGGCTTCGGTCACCCGCTTGCTGTCTTGGCTGCGTGCCGGAGGGGTCGGCTAATCTCCTTTCAGAGAGATAGTGATTTTACTGCTTAGGATAAGGATATGGATATGTGCTCATTTGTGTCAAGGGCGGCNCAGTGCACG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00296	110673	113377	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000296s00018756.1	PF00173.23	Cyt-b5	25	95	2.90E-22
Glyur000296s00018756.1	PF00487.19	FA_desaturase	154	424	1.00E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.763
SRR1783600	control	37.097
SRR1783602	moderate drought stress	12.669
SRR1811619	moderate drought stress	12.462

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.888
DRR006520	Root Summer glycyrrhizin high producing strain	18.697
DRR006521	Root Winter glycyrrhizin high producing strain	0.186
DRR006522	Root Winter glycyrrhizin high producing strain	0.182
DRR006523	Root Summer glycyrrhizin low producing strain	6.720
DRR006524	Root Summer glycyrrhizin low producing strain	6.482
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.704
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.946

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.277
SRR2868004	Drought Stress (root)	10.743
SRR2967015	Control (root)	19.686

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.372
SRR9715740	Leaf	9.021
SRR9715741	Leaf	5.836
SRR9715739	Root	18.973
SRR9715742	Root	13.404
SRR9715743	Root	17.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.981
SRR8749028	MeJA induced 9h	0.296
SRR8749029	MeJA induced 9h	0.816
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.143

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.767
SRR8400027	Control - Root	49.359