Gene detail information of Glyur000296s00018748 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33040.1 | 4.00E-39 | Thioredoxin superfamily protein |
| NR | XP_004498874.1 | 2.18E-68 | PREDICTED: glutaredoxin-C6-like [Cicer arietinum] |
| COG | YP_001527212.1 | 2.00E-06 | glutaredoxin [Azorhizobium caulinodans ORS 571] |
| Swissprot | tr|Q8L9S3|GRXC6_ARATH | 6.00E-59 | Glutaredoxin-C6 |
| trEMBL | tr|I1M938|I1M938_SOYBN | 1.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G11010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00296 | 69509 | 70213 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000296s00018748.1 | PF00462.19 | Glutaredoxin | 66 | 134 | 2.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 54.865 |
| SRR1783600 | control | 55.280 |
| SRR1783602 | moderate drought stress | 16.755 |
| SRR1811619 | moderate drought stress | 17.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.741 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.455 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.423 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.236 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 85.169 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 85.135 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 44.337 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 44.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.200 |
| SRR2868004 | Drought Stress (root) | 40.497 |
| SRR2967015 | Control (root) | 29.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.994 |
| SRR9715740 | Leaf | 8.462 |
| SRR9715741 | Leaf | 6.915 |
| SRR9715739 | Root | 25.698 |
| SRR9715742 | Root | 8.888 |
| SRR9715743 | Root | 12.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 59.610 |
| SRR8749028 | MeJA induced 9h | 53.413 |
| SRR8749029 | MeJA induced 9h | 42.811 |
| SRR8749030 | Uninduced | 17.981 |
| SRR8749031 | Uninduced | 2.268 |
| SRR8749032 | Uninduced | 4.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 98.077 |
| SRR8400027 | Control - Root | 110.760 |